G1548612 (LOC106588371)


Basic Information

Item Value
gene id G1548612
gene name LOC106588371
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40736764 ~ 40740990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1772017
TGTACATAGTTTTATACCCGGTGTAATCCCAAGTTGTCTCCGTAGACGATCATTCTCCTCTTTAGATCGTGAGATCTCATCCTGGTACTCAGTTACGACTTTCTCAACTGCCCCCAAAATCTCCACCGTCGCCGCAGTCAAACACTCAGAAAGAAACGAATTCAAAGACTGTAATTTAGACATTGTTAGTAGACTTGTGGTATTATTATTGTCAAAAGAGCCTGTTCCTCTCAGGTTTTATTCACCTATGTAGTCTACAATTCGTCTACGAGGAAGGAATGTTAAAAAAGAAACTCGCTCT
>TU1772020
TAAAGAGTCTATATATATTAATTTGGAACCAACAGCATGAATGATCCAGTTGCTTTCCTTTCGAGTTTTGTCCACATCCTGCATTTTTAGTCCCATCTTCTGACGTGAGATGTCCGTGTCCTCACTGTCTTTCGCCATTCTGTTTTGGTTCTGTTTTTGTCATTTGTGGACTTTATCCACATGTTTCAGCAGGTAAGCATTCCCAGTGAATCTTCTACCGCACACAGAACAGCCATGCTGTTTTTTACCTGTGTGAGTCAGTATATGCCTGTTCAGATGTGTTTTTCGACTGAATTTCTTTCCGCAGCTACCACAGCTAAatggtctctctcctgtgtgagtacGTACATGTTGGGTTAGGTTCCCCTTCTGATAGAAGCTTTTCCCGCAGTATCCACAGCTAAATGCTTTCTCTCCTTTATGAGTCTGTATATGCACATTCAGCAGCCCCTCGCTATAGAAGCatttcccacagtcaccacagctaaatggCCTCTCCCGTGTATGAATCCTCATGTGCTGGGATAGATGTGCTCTGTTTTTAAAGGTCTTGCCACAAACAAGGCAGGGGTTCCCACCGTGACAGAGTGGGACATGGGCCTTCAGTTTACTGGTGGAGTTGTAGGGGCATTCAACGGGTCTTTCCCTGGCGAGAGTCACATGCCTCTGAAGGTCAGCTTTTAGAGCAAATACTTTGCCGCAGTCACAGCAGCAGTGAGATTTTTTAGACATGGTACTGAGTTTAGAACAGTATGCCCCCAATGTTGGTTCGGGAGCCAATGGTGGACTGTTTACTTGGTCACTAATTACAGCTGAGCAGTGGCTGATGGCTTCCTGATCCCATTCACTTTTCACACAGGGAGAACTAAATATAAACTCTATGGTATTACCCTCTGGCCCTTGAAACTGCTCTTCCTCCTGGCTGGTCCTCAGTTCCTCTTTAATCAGTATGTGCCCTGGTTCCTCTTGTCCCAGACTAGGGCACCACTCCTGCTCACAGTGTTTTTGCTCAGGGGGAAACTCCTcttcagagacagggagagagagctgctGGGAGTCTGGATGGAAGAAATGATAGGCGCAGACATGACTGAGTACACATTATTTTTGCAAAATCAACTAAAAAGATAATGAAATGATAATCGCTGATAGCCTAAACAGTATATTAAGTGAGTAAATGGGATCTACACACAAACCTATTGTACATAGTTTTATACCCGGTGTAATCCCAAGTTGTCTCCGTAGACGATCATTCTCCTCTTTAGATCGTGAGATCTCATCCTGGTACTCAGTTACGACTTTCTCAACTGCCCCCAAAATCTCCACCGTCGCCGCAGTCAAACACTCAGAAAGAAACGAATTCAAAGACTGTAATTTAGACATTGTTAGTAGACTTGTGGTATTATTATTGTCAAAAGAGCCTGTTCCTCTCAGGTTTTATTCACCTATGTAGTCTACAATTCGTCTACGAGGAAGGAATGTTAAAAAAGAAACTCGCTCT
>TU1772015
tgaacaaaaatataaacgcaacatgtaacgtGTGGGTCCCATTTTTCATtagcttaattttttttttttaaatgttccatatgcacaaaaatattatttttctcaaatgtttacATCACTGTTAGCGAACATTTCTCCTTCGCAAAAaatgatccatccacctgacaggtgttgcgtatcaagaagctgattaaacagcatgatcattacacaggtgcaccttgtgctagggacaataaaagtccacaacacaataacacagatgtctcaagttgagggagcatgcaattggcatgctggcttcaagaatgtccaccagagctgttgccagagaatttaatgttaatttctctaccataagtctcctccgtcgttttagagaatttggcattatgtccaacggcctcacaaccacagaccacatgtaaccacaccagcaaaggacctccacatccggcttcttcacctgcgggatcatctgagagcagccacctggacaactggggaaactgtgggtttgcaggGAAACTCATCTGTGTGCTGGTAGTCCTCACCAGTCTGGACCTGACAGCAGTTTGGTGACGTAACCAACGTCAGTTGGCAGAttctcacctttgatggccactggcaacATGGAGAAGTTTGcttttcacggatgaatcccggtttcaactgtaccgggcagatggcaagcagcgtgtatggcgtcgtgttggtgagtggtttgctgatgtcaacattgtgaacagagtgccccatggtggcggagttatggtatgggcagggatAGGCATTAGCTACGGacaacaaatccaattttatcgatggcaattttaatgcagagataccgtgacaagatcctgaggcccaaggccgccatcatctcatgttttaccatgataatgcacggccccatgtcgcaaggatctgtacacaattcctggaagctgaaaacctcccagttcttccatggcctggaTACTCAGCACACGTCACCCATTGatcacgtttgggatgctctggatcgatgtgcacaaccgtgtgttccagttcctgccaatatccaaaAACTTCGCactgccattgaagaggagtgggacaacatttcaaaAGGCCACAATCAACTGCATGATCAACTCAATGCTGAGaggtgtcacgctgcatgaggcaaatggtggtcacaccagatactgactggttttctgatccacacccctacttgtttttttaaaggtatctgtaaaCAACGGACGCATATTagtattcccagtcgtgaaatccatagattaggacctaatatatttatttcaattgactgatttcattatatgaactgtaactcagtcaaatctttgaaattgttgcatgttgcatttatatttttgttcagtgcatttatgtagctagctatttatttagcaagctaaaaacacagagGCTAACGTTAACCAGCTAGCTGCTGGGAGGATGTCttgtcattggaggagtgggtgagtgactgactttttcCCCCCTCATAGTTTTTCAGTggctacagctagagatgcaggtgttaTTCAAAACATTTGAAATTGCTTTGCTAGCTGAGCTGAACTTGAACTTATCCACAGTTAGCATATCTCCTAGTTGTCAACCAAATGATGTATTTGGCGTCGATCAAATGGGCGGGCAGACGGGCAAATTCCCATTCAGATGTCAAAACCCGGTTTGGAACAAGCgggcattggcaggcaagctgcagaaggacgagcAGGCTACTATTCCCCATCGTTTCAGTGGAATTTTGATGGCCAACTAGCTTAACaggtttgagagggtttatctaagGTGTCCTCGTTAGATTTTAGCTTATCTCGCTAACAATAGCATTAGAtgttgattttgttgttgttgatgtgcatcggcaactgagggagagacagcctaccttttcatggttgttttaTCAATAGGACTGTGAAGTTCCCAAATGGAAGAGGACTATTTACAtgtttgcagaaatccattcaggtgtattttgagGCTTTTGGGCGAATacattctaatgatctaaagtcacaCTGTTGCTATTAcatgtaaacacagtccagttcaaagttaAGGATGGCAGGCCCGTGTGGCAAAAGACATATTTGCATATAGGCTTACtatagctctgattggctatggcgcaCCGGTCTGCGTAAACTCTGGTCCTAgacagatgttttatttactgcagtgtctattaaatATCAGctgctttcccactctatattgctatagaattttcacaaaagCAGTACTATAcatcccaaacattctatgaattatcatatctaagtgctcgcttgtcagattattataaatgtttattttaaaggTGTCATtttcctgggggtgtatatgaacagattttggATTAAAGCTGATGTTGGGTTAAAGCTGAAATCCTCAAAAAACAGCACCATTGATCACCCCAGGCACATTTgttatcatttttttttgttatttctgtattAACATCAGTCTGATCATTTTCTCTTCACCGTGGCTCAGACGTTCCAAAACAATCTAATTGTTAACAGGCTAATGTTTAAAGAGTCTATATATATTAATTTGGAACCAACAGCATGAATGATCCAGTTGCTTTCCTTTCGAGTTTTGTCCACATCCTGCATTTTTAGTCCCATCTTCTGACGTGAGATGTCCGTGTCCTCACTGTCTTTCGCCATTCTGTTTTGGTTCTGTTTTTGTCATTTGTGGACTTTATCCACATGTTTCAGCAGGTAAGCATTCCCAGTGAATCTTCTACCGCACACAGAACAGCCATGCTGTTTTTTACCTGTGTGAGTCAGTATATGCCTGTTCAGATGTGTTTTTCGACTGAATTTCTTTCCGCAGCTACCACAGCTAAatggtctctctcctgtgtgagtacGTACATGTTGGGTTAGGTTCCCCTTCTGATAGAAGCTTTTCCCGCAGTATCCACAGCTAAATGCTTTCTCTCCTTTATGAGTCTGTATATGCACATTCAGCAGCCCCTCGCTATAGAAGCatttcccacagtcaccacagctaaatggCCTCTCCCGTGTATGAATCCTCATGTGCTGGGATAGATGTGCTCTGTTTTTAAAGGTCTTGCCACAAACAAGGCAGGGGTTCCCACCGTGACAGAGTGGGACATGGGCCTTCAGTTTACTGGTGGAGTTGTAGGGGCATTCAACGGGTCTTTCCCTGGCGAGAGTCACATGCCTCTGAAGGTCAGCTTTTAGAGCAAATACTTTGCCGCAGTCACAGCAGCAGTGAGATTTTTTAGACATGGTACTGAGTTTAGAACAGTATGCCCCCAATGTTGGTTCGGGAGCCAATGGTGGACTGTTTACTTGGTCACTAATTACAGCTGAGCAGTGGCTGATGGCTTCCTGATCCCATTCACTTTTCACACAGGGAGAACTAAATATAAACTCTATGGTATTACCCTCTGGCCCTTGAAACTGCTCTTCCTCCTGGCTGGTCCTCAGTTCCTCTTTAATCAGTATGTGCCCTGGTTCCTCTTGTCCCAGACTAGGGCACCACTCCTGCTCACAGTGTTTTTGCTCAGGGGGAAACTCCTcttcagagacagggagagag
>TU1772018
TAAAGAGTCTATATATATTAATTTGGAACCAACAGCATGAATGATCCAGTTGCTTTCCTTTCGAGTTTTGTCCACATCCTGCATTTTTAGTCCCATCTTCTGACGTGAGATGTCCGTGTCCTCACTGTCTTTCGCCATTCTGTTTTGGTTCTGTTTTTGTCATTTGTGGACTTTATCCACATGTTTCAGCAGGTAAGCATTCCCAGTGAATCTTCTACCGCACACAGAACAGCCATGCTGTTTTTTACCTGTGTGAGTCAGTATATGCCTGTTCAGATGTGTTTTTCGACTGAATTTCTTTCCGCAGCTACCACAGCTAAatggtctctctcctgtgtgagtacGTACATGTTGGGTTAGGTTCCCCTTCTGATAGAAGCTTTTCCCGCAGTATCCACAGCTAAATGCTTTCTCTCCTTTATGAGTCTGTATATGCACATTCAGCAGCCCCTCGCTATAGAAGCatttcccacagtcaccacagctaaatggCCTCTCCCGTGTATGAATCCTCATGTGCTGGGATAGATGTGCTCTGTTTTTAAAGGTCTTGCCACAAACAAGGCAGGGGTTCCCACCGTGACAGAGTGGGACATGGGCCTTCAGTTTACTGGTGGAGTTGTAGGGGCATTCAACGGGTCTTTCCCTGGCGAGAGTCACATGCCTCTGAAGGTCAGCTTTTAGAGCAAATACTTTGCCGCAGTCACAGCAGCAGTGAGATTTTTTAGACATGGTACTGAGTTTAGAACAGTATGCCCCCAATGTTGGTTCGGGAGCCAATGGTGGACTGTTTACTTGGTCACTAATTACAGCTGAGCAGTGGCTGATGGCTTCCTGATCCCATTCACTTTTCACACAGGGAGAACTAAATATAAACTCTATGGTATTACCCTCTGGCCCTTGAAACTGCTCTTCCTCCTGGCTGGTCCTCAGTTCCTCTTTAATCAGTATGTGCCCTGGTTCCTCTTGTCCCAGACTAGGGCACCACTCCTGCTCACAGTGTTTTTGCTCAGGGGGAAACTCCTcttcagagacagggagagag
>TU1772016
GCATTATAAAGTGCCAtatttattctttaaaaaattgcCAATTTGGGTCTCGGTTGCACATTTgttttgtaataaaaaaaaaattcaaaataaaGAAATTTGGCCCTGTTGCCGATTCGGTTTGACACCCTAGGGCTAGcgtatctatactgaacaaaaatataaacgcaacatgtaacgtGTGGGTCCCATTTTTCATtagcttaattttttttttttaaatgttccatatgcacaaaaatattatttttctcaaatgtttacATCACTGTTAGCGAACATTTCTCCTTCGCAAAAaatgatccatccacctgacaggtgttgcgtatcaagaagctgattaaacagcatgatcattacacaggtgcaccttgtgctagggacaataaaagtccacaacacaataacacagatgtctcaagttgagggagcatgcaattggcatgctggcttcaagaatgtccaccagagctgttgccagagaatttaatgttaatttctctaccataagtctcctccgtcgttttagagaatttggcattatgtccaacggcctcacaaccacagaccacatgtaaccacaccagcaaaggacctccacatccggcttcttcacctgcgggatcatctgagagcagccacctggacaactggggaaactgtgggtttgcaggGAAACTCATCTGTGTGCTGGTAGTCCTCACCAGTCTGGACCTGACAGCAGTTTGGTGACGTAACCAACGTCAGTTGGCAGAttctcacctttgatggccactggcaacATGGAGAAGTTTGcttttcacggatgaatcccggtttcaactgtaccgggcagatggcaagcagcgtgtatggcgtcgtgttggtgagtggtttgctgatgtcaacattgtgaacagagtgccccatggtggcggagttatggtatgggcagggatAGGCATTAGCTACGGacaacaaatccaattttatcgatggcaattttaatgcagagataccgtgacaagatcctgaggcccaaggccgccatcatctcatgttttaccatgataatgcacggccccatgtcgcaaggatctgtacacaattcctggaagctgaaaacctcccagttct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1772017 False 301 lncRNA 0.41 1 40736764 40737064
TU1772020 False 1501 lncRNA 0.44 1 40736764 40738264
TU1772015 False 3621 lncRNA 0.44 1 40737220 40740840
TU1772018 False 1045 lncRNA 0.47 1 40737220 40738264
TU1772016 True 1116 lncRNA 0.44 1 40739875 40740990
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Neighbor

gene id symbol gene type direction distance location
LOC118941161 NA coding downstream 58687 40675469 ~ 40678077 (-)
LOC110496249 NA coding downstream 183145 40545209 ~ 40553619 (-)
LOC118941163 NA coding downstream 233286 40501665 ~ 40503478 (-)
LOC118941162 NA coding downstream 235354 40500738 ~ 40501410 (-)
LOC100653472 LOC100653472 coding downstream 249124 40485361 ~ 40487640 (-)
LOC110496253 LOC106588368 coding upstream 45837 40786827 ~ 40807771 (-)
LOC110496254 col14a1 coding upstream 73837 40814827 ~ 40901992 (-)
LOC118941164 LOC106588367 coding upstream 162766 40902519 ~ 40908744 (-)
ndufb9 ndufb9 coding upstream 424549 41165539 ~ 41169132 (-)
LOC110496267 LOC106588355 coding upstream 484695 41225685 ~ 41327540 (-)
G1548513 NA non-coding downstream 39289 40642185 ~ 40697475 (-)
G1548512 LOC106588380 non-coding downstream 42032 40646962 ~ 40694732 (-)
G1548581 NA non-coding downstream 83522 40651342 ~ 40653242 (-)
G1548571 NA non-coding downstream 115409 40621122 ~ 40621355 (-)
G1548568 NA non-coding downstream 118727 40617201 ~ 40618037 (-)
G1548613 NA non-coding upstream 1743 40742733 ~ 40743516 (-)
G1548627 NA non-coding upstream 19355 40760345 ~ 40760570 (-)
G1548631 NA non-coding upstream 42988 40783978 ~ 40786646 (-)
G1548647 NA non-coding upstream 90375 40831365 ~ 40831747 (-)
G1548658 NA non-coding upstream 109627 40850617 ~ 40850823 (-)
G1548517 NA other downstream 51123 40640175 ~ 40685641 (-)
G1548367 NA other downstream 344881 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1048083 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1105666 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1948963 38776284 ~ 38787801 (-)
LOC110496277 LOC106588347 other upstream 922446 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1574296 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1618158 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 2154041 42895031 ~ 43015119 (-)

Expression

G1548612(LOC106588371) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G1548612(LOC106588371) Expression in each Bioproject

Bar chart with 20 bars.
G1548612(LOC106588371) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network