G1548678


Basic Information

Item Value
gene id G1548678
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40889592 ~ 40957871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1772091
TGACTGCATCATGATAAATATTACCTGCAGGCTTTCAGTTTAGTGTTACCCATATCTCATTGTACACCACTTCCATTAGTGAAGCATTCAAAAGAAGCTGGATGTTGGATGCACTTACGACAAGAGTCTTCTTTCCCTGCAACTCCTTGCTTATCCCCATACTTGAGAGCTGTCCAGCTCTGAACACAGCCAACACGAGGTGCTACTTCACCACAACAGTGAACTCTGGAACTCCATGAGTGTGGGAAAGTCATTTATTGTCAGAAGAGGGAACTTCGTGTTTCTGCAACTGTAAAAGGCAAGAGACCAATTGAAAGCTTTGGGAACCTGTCCAGAACTCACCTGATATTAAGCTTTACAGGAAACGCTAATGATTTACAGGGAAGACGTTTTGCAACTCTGATTTTTACAATGTTCAGATCTGATTGCAGAGGGCTAAAAGGTTAGAGAGGCGAGCCAGCAACCGGAGCGTTTCGAGTTCAAATCCGGGGTCCAACAAGAAAATCTGTTGGGAAGTGAGCTGGCAGGCAgagggttgctggtatcaaattctagatgccattgcctgctgttgtgcccttgagcaaaacACTTAACCCCCCACAATAGCTCCCCGCACCTCTCCAAAAGCCTGTGTATATATGTGTCTTTCAGAGTGGTTGGGTTGAAAGTGAAAGTCAGATTTCGGTTGGACCCAgtgtgcaattgaccaataaagtgatGTTAATCTTAAAATCAATATTTTATGAGAGTAGGAGACTTTATTAATTAATAGGGCAAGTATTGCCCTGGTATTATTAGGAATTGGTGAACAATTGTTGATGGTGCAATTGTTGAAATAAAGAAATATAGATAATTAAATCAGCAATCGAAACAATAATAAAGCGTTTCCCCCACccctgtttcagtaaaaagctaGGGGTGGGACTGGAGAAATGTACTGTAACCACTCGCAAATTCTTATACGGAGCTATGGATGCAAAAATGACAGTGTTATTCTGTATGTCGCTCtggaggaactgcccctccctaccttcaggctatgctcaaacccaaCACCCCAACCCAAGCACCGTTCTGCCACatcaggtctcttggccctcccacccatACGGAAGTGCAGCTCCCGCTCAGcacagtccaagctcttctctgtggtagaaccagcttccccctgaagttaggacagcagagtcccttcccatcttccgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1772091 True 1213 lncRNA 0.45 2 40889592 40957871

Neighbor

gene id symbol gene type direction distance location
LOC110496253 LOC106588368 coding downstream 81821 40786827 ~ 40807771 (-)
LOC118941161 NA coding downstream 211515 40675469 ~ 40678077 (-)
LOC110496249 NA coding downstream 335973 40545209 ~ 40553619 (-)
LOC118941163 NA coding downstream 386114 40501665 ~ 40503478 (-)
LOC118941162 NA coding downstream 388182 40500738 ~ 40501410 (-)
ndufb9 ndufb9 coding upstream 207668 41165539 ~ 41169132 (-)
LOC110496267 LOC106588355 coding upstream 267814 41225685 ~ 41327540 (-)
LOC110496269 LOC106588349 coding upstream 572872 41530743 ~ 41531326 (-)
LOC110496931 LOC106588283 coding upstream 574460 41532331 ~ 41533462 (-)
LOC110496274 NA coding upstream 680383 41618290 ~ 41645613 (-)
G1548658 NA non-coding downstream 38769 40850617 ~ 40850823 (-)
G1548647 NA non-coding downstream 57845 40831365 ~ 40831747 (-)
G1548631 NA non-coding downstream 102946 40783978 ~ 40786646 (-)
G1548627 NA non-coding downstream 129022 40760345 ~ 40760570 (-)
G1548613 NA non-coding downstream 146076 40742733 ~ 40743516 (-)
G1548739 NA non-coding upstream 43244 41001115 ~ 41073864 (-)
G1548824 NA non-coding upstream 173588 41131459 ~ 41131992 (-)
G1548845 NA non-coding upstream 224195 41182066 ~ 41182287 (-)
G1548848 NA non-coding upstream 246100 41203971 ~ 41205357 (-)
G1549043 NA non-coding upstream 392212 41350083 ~ 41350320 (-)
G1548517 NA other downstream 203951 40640175 ~ 40685641 (-)
G1548367 NA other downstream 497709 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1200911 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1258494 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 2101791 38776284 ~ 38787801 (-)
LOC110496277 LOC106588347 other upstream 705565 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1357415 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1401277 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1937160 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 2673135 43624763 ~ 43668196 (-)

Expression


Co-expression Network