G1548739



Basic Information


Item Value
gene id G1548739
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41001115 ~ 41073864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1772154
cacgacacaagtagttgatacatcagaaaagcagaacttaatatttggtacagataCAAATGTATACAGATACATTTGGTAcagtttgcaattacagagatcatatgtttcctgtagttcttgaccaggtttgcaaacactgcagcagggattttggcccactcctccatacagaccttctccagatccttcaggtttcggggctgtcgctggccaatatggactttcagctccctccaaagatgttctattgggttcaaggtctggagactggctaggccacttgtgatgcttcttacggagccactccttagttgccctagCTGAGTatttcaggtcgttgtcatgctggaagacccagccacgacaaatcttcaatgctcttactgagggaaggaggttgttggccaaaatctcgcaatacatggccccatccatcctcccctcaatacggtacagtcgtcctgtcccctttgcataAAACCATCCCCAAAGaaggatgtttccacctccatgcttcacggttgggatggtgttcttggggttgtactcatccttcttcttcctccaaacacggcgagtggagtttagaccaaaaagctctatttttgtctcatcagaccattcctcctctggatcatgcagatggtcattggcaaacttcagatgggcctggacatgcgctggcttgagcagggggaccttgcgtgcactgcaggattttaatccatgacggcgtagtgtgctactaatggttttctttgagactgtggtcccagctctcttcaggtcattgaccaggtcctgccatgtagttctgggctgatcccttaccttcctcatgatcattgatggcccacgaggtgagatcttgcatggagccccagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccattgtggagaggttagagtctgtttgattgagtgtgtggacatgtgtcttttatataggtaacgagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaactaacaggactgtgagagccggaattcttactggttggtaggtgatcaaatacttatgtcatgcaataaaatgcaaattaattacttaaaaa

Function


NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1772154 True 1216 lncRNA 0.46 2 41001115 41073864

Neighbor


gene id symbol gene type direction distance location
LOC118941164 LOC106588367 coding downstream 92371 40902519 ~ 40908744 (-)
LOC110496254 col14a1 coding downstream 99123 40814827 ~ 40901992 (-)
LOC110496253 LOC106588368 coding downstream 193344 40786827 ~ 40807771 (-)
LOC118941161 NA coding downstream 323038 40675469 ~ 40678077 (-)
LOC110496249 NA coding downstream 447496 40545209 ~ 40553619 (-)
ndufb9 ndufb9 coding upstream 91675 41165539 ~ 41169132 (-)
LOC110496267 LOC106588355 coding upstream 151821 41225685 ~ 41327540 (-)
LOC110496269 LOC106588349 coding upstream 456879 41530743 ~ 41531326 (-)
LOC110496931 LOC106588283 coding upstream 458467 41532331 ~ 41533462 (-)
LOC110496274 NA coding upstream 564390 41618290 ~ 41645613 (-)
G1548678 NA non-coding downstream 43244 40889592 ~ 40957871 (-)
G1548658 NA non-coding downstream 150292 40850617 ~ 40850823 (-)
G1548647 NA non-coding downstream 169368 40831365 ~ 40831747 (-)
G1548631 NA non-coding downstream 214469 40783978 ~ 40786646 (-)
G1548824 NA non-coding upstream 57595 41131459 ~ 41131992 (-)
G1548845 NA non-coding upstream 108202 41182066 ~ 41182287 (-)
G1548848 NA non-coding upstream 130107 41203971 ~ 41205357 (-)
G1549043 NA non-coding upstream 276219 41350083 ~ 41350320 (-)
G1549048 NA non-coding upstream 282608 41356472 ~ 41356756 (-)
G1548517 NA other downstream 315474 40640175 ~ 40685641 (-)
G1548367 NA other downstream 609232 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1312434 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1370017 39625771 ~ 39641803 (-)
LOC110496277 LOC106588347 other upstream 589572 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1241422 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1285284 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1821167 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 2557142 43624763 ~ 43668196 (-)

Expression



Co-expression Network