G1548824


Basic Information

Item Value
gene id G1548824
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41131459 ~ 41131992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1772253
ctggctatctgtaaattatgtctgagtgttggagtgtgcccctggctatgtggaaatgatgtctgagtgttggagcgttcccctggctatcaggaaatgatgtctgagtgttggagtgttcccctggctatctgtaaatgttgtctgagtgttggagtgttcccctggctatctgtaaatgatgtctgagtgttggagtgttcccctggctatctgtaaatgatgtctgagtgttggagcgtgcccctagctatctgtaaattatgtctgagtgttggagtgttcccctggctatctgtaaatgttgtctgagtgttggagtgtgcccctagctatctgtaaatgatgtctgagtgttggagtgttcccctggctatctgttaaatgatgtctgagtgttggagtgttcccctggctatctgtaaatgatgtctgagtgttggagtgttcccctggccatctgtaaattatgtctgagtgttggagtgttcccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1772253 True 494 lncRNA 0.47 2 41131459 41131992

Neighbor

gene id symbol gene type direction distance location
LOC118941164 LOC106588367 coding downstream 222715 40902519 ~ 40908744 (-)
LOC110496254 col14a1 coding downstream 229467 40814827 ~ 40901992 (-)
LOC110496253 LOC106588368 coding downstream 323688 40786827 ~ 40807771 (-)
LOC118941161 NA coding downstream 453382 40675469 ~ 40678077 (-)
LOC110496249 NA coding downstream 577840 40545209 ~ 40553619 (-)
ndufb9 ndufb9 coding upstream 33547 41165539 ~ 41169132 (-)
LOC110496267 LOC106588355 coding upstream 93693 41225685 ~ 41327540 (-)
LOC110496269 LOC106588349 coding upstream 398751 41530743 ~ 41531326 (-)
LOC110496931 LOC106588283 coding upstream 400339 41532331 ~ 41533462 (-)
LOC110496274 NA coding upstream 506262 41618290 ~ 41645613 (-)
G1548739 NA non-coding downstream 57595 41001115 ~ 41073864 (-)
G1548678 NA non-coding downstream 173588 40889592 ~ 40957871 (-)
G1548658 NA non-coding downstream 280636 40850617 ~ 40850823 (-)
G1548647 NA non-coding downstream 299712 40831365 ~ 40831747 (-)
G1548845 NA non-coding upstream 50074 41182066 ~ 41182287 (-)
G1548848 NA non-coding upstream 71979 41203971 ~ 41205357 (-)
G1549043 NA non-coding upstream 218091 41350083 ~ 41350320 (-)
G1549048 NA non-coding upstream 224480 41356472 ~ 41356756 (-)
G1549055 NA non-coding upstream 232132 41364124 ~ 41364360 (-)
G1548517 NA other downstream 445818 40640175 ~ 40685641 (-)
G1548367 NA other downstream 739576 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1442778 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1500361 39625771 ~ 39641803 (-)
LOC110496277 LOC106588347 other upstream 531444 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1183294 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1227156 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1763039 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 2499014 43624763 ~ 43668196 (-)

Expression


Co-expression Network