G1548848


Basic Information

Item Value
gene id G1548848
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41203971 ~ 41205357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1772283
CGGTTTATTAAATCATTGCAAAATACAAGAGCGATCAAACAgtattttctctatttttgttgGCATAAGTATGTAAACATGGCAGCATAGATACATTTTATGTGCCTGTCGTTTACATGAGAGTGGGGATGAGCATTAGATAAGTCCATGTTTGTTTAAATGAATAGTTCTTATTACCATGCCAGACTTTCTATCATGTCGTTAATGGTGACAAAGAGAAAAAAGAATCAGACGAGGTGTGCTTTGACATCATGGTGAGAGGACACCACTATCATGGTGGACCAATAGCcaagaagggagagaagagttGGAAAGCAATGACAGGGAGTGAGGTTCAGATACAGATGgcaaaacagacaaacacagagaacCATACCACAGGAATCAAACTGGAGAACAGAACACCAAACAAGATTGAAGGAAACTTGATGTACATGTTTGGGATAGAGAAAGTGTTCAGGCGAAAGACAgaagaaagagatggagacatcCCATGAAGGTTGCAGGAGAAAATTGGCAAGAGCCAAATACATCCCAGAGATGCAAGATGGCTTACCTTCCACATTAACATGTTCCAACATATGTCTGGGATTTCCGAGACTATAGAAGAGACCAATGGAGTGGAGTTAGACAAACACCAAATAGAAGAGGACAGAGCGTGTGGATCAAGGGTCTCTGGAGCCGTAGAGCCTAAAACAGCTGAAGGGCACATGTGACCAGGAGTCTCCAGCAAGCCCAGAACAGTGGCGCAACAAGCAAGAACAGAGGACGCCAGGAGGATAAGCAGTAGGGAGAACGAGTCGGGGCAGATAGAAAATGTCTCCGTCCACCAGAGGGCAGAGGAGGTGAGGAACAAGTGCATGGCTTCTATTAGCGCTGAAGAAAAGGATGGAGTGAGACCATGATCAAACTGCAGAAATACTAGTCACCCAGAACAGAACATTTCCATTGCTTTCAAACAAAACCCATCAAAGCATTTATGTTACACCTTGGTGCCCGTTTTCTTATCAGTCTGGTTGTGCTGAAATATGCAGGTTTTTTTTTACAGCCAAGTActtgtgacaaaaaaaaaactgcatttgGCAGTAATAGTTTAAATAATAAGGGTCATTATGAACAGTTTAAGTACTGCATTTACTGTAATACGAAAAGGCAAACGGAAAAACGAACACCAATATTCATAGACAGAAAACACAAAGAAGATCCTTTCACACAATAAATGACTAGTTTGATTAGGCCACCATAAGCAAATGGTTGTCTATCAGTGAACAAACAGTAACTATCCTACAAAAAGTCAATCATAACGGCAACGGAATAGTAGGTGCTGTAATTGCATTTCAACAAACAGTGAGTGCGCAGTTTTACTCTGTTGTTCAGCTTACTTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1772283 True 1387 lncRNA 0.41 1 41203971 41205357

Neighbor

gene id symbol gene type direction distance location
ndufb9 ndufb9 coding downstream 34839 41165539 ~ 41169132 (-)
LOC118941164 LOC106588367 coding downstream 295227 40902519 ~ 40908744 (-)
LOC110496254 col14a1 coding downstream 301979 40814827 ~ 40901992 (-)
LOC110496253 LOC106588368 coding downstream 396200 40786827 ~ 40807771 (-)
LOC118941161 NA coding downstream 525894 40675469 ~ 40678077 (-)
LOC110496267 LOC106588355 coding upstream 20328 41225685 ~ 41327540 (-)
LOC110496269 LOC106588349 coding upstream 325386 41530743 ~ 41531326 (-)
LOC110496931 LOC106588283 coding upstream 326974 41532331 ~ 41533462 (-)
LOC110496274 NA coding upstream 432897 41618290 ~ 41645613 (-)
LOC110496275 LOC106588348 coding upstream 445220 41650577 ~ 41662876 (-)
G1548845 NA non-coding downstream 21684 41182066 ~ 41182287 (-)
G1548824 NA non-coding downstream 71979 41131459 ~ 41131992 (-)
G1548739 NA non-coding downstream 130107 41001115 ~ 41073864 (-)
G1548678 NA non-coding downstream 246100 40889592 ~ 40957871 (-)
G1549043 NA non-coding upstream 144726 41350083 ~ 41350320 (-)
G1549048 NA non-coding upstream 151115 41356472 ~ 41356756 (-)
G1549055 NA non-coding upstream 158767 41364124 ~ 41364360 (-)
G1549077 NA non-coding upstream 175137 41380494 ~ 41380749 (-)
G1549096 NA non-coding upstream 188453 41393810 ~ 41394099 (-)
G1548517 NA other downstream 518330 40640175 ~ 40685641 (-)
G1548367 NA other downstream 812088 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1515290 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1572873 39625771 ~ 39641803 (-)
LOC110496277 LOC106588347 other upstream 458079 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1109929 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1153791 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1689674 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 2425649 43624763 ~ 43668196 (-)

Expression


Co-expression Network