G1549888 (psb4)


Basic Information

Item Value
gene id G1549888
gene name psb4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41841712 ~ 41843057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773427
TTTAACTCAGCCTCATTCCTTAATTATTTCCTCTCATGTTGTGCATATTCATATACTTCTGTCAATGGATAATATCTGTATATAAAAAATGTTGACACTAGCATATGCAAACGCACTGATGTCAttgacagagatggtcagatcTGCTTCTGTGTGCCAATGTCAGTGAGTTAAGCATACAAAGCTAAGGGCATCTCTTGCTGTTTCTCCTTTCTAGAACCAACCTATTATTATGAATGCTAATATATTATGAACTACTCAATTTTCTGTGTATGTGCCTTTTAAGAGTcaacaataaataaaaacaaaaaaatatatatacttttaaaACATTAATGTAAATATTCACCATAAAAGGACCAAGACAGCATATCCGATTTTTCTGAAAGAAACCTCAAACTTACACCATCTGTTCGATTATCTGCTTCATGTACTGGTAGTCTGCGTAGTCACCGGAAGCGCCCAGGATGGTGGTGTCATTCACCTTCATGAGACGAGAGATGTTACGGAACCGTGCCAGGGAACCATAGGAGCCCAGCATGTCAGCTGCGATGATGACTCCACCTGTAAACTTCACTCCCAACACTGATGTTCCCGTCACCATGGGGTTTAGAGTGTGTTTGATAGGTCCGCATCCTGGGGCTAAACTGCTGCCAGGAAATGAATAAAATTGTCCGGGTTTTGGTCCATTCTCCCAGAAATTGAGCTTCAAACCGCTTGGATCCATGTTACAAATTTGCGGATGTGACGACACAGCTGCTCGTGTTGTGTTCTTTTGCAAAGATTATGGGATACAGGAAGCAGACAATTCTAACAAAAGCCAAACATTA

Function

NR:

description
proteasome subunit beta type-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773427 True 830 lncRNA 0.40 2 41841712 41843057

Neighbor

gene id symbol gene type direction distance location
LOC110496284 LOC106588339 coding downstream 456 41829155 ~ 41841256 (-)
LOC110496283 LOC106588340 coding downstream 29553 41779561 ~ 41812159 (-)
LOC110496281 LOC106588342 coding downstream 89648 41723314 ~ 41752064 (-)
LOC110496279 LOC106588343 coding downstream 119750 41704525 ~ 41721962 (-)
LOC110496277 LOC106588347 coding downstream 170196 41663436 ~ 41671516 (-)
LOC110496288 LOC106588334 coding upstream 103205 41946262 ~ 41962098 (-)
LOC110496289 jtb coding upstream 166792 42009849 ~ 42014114 (-)
LOC110496292 LOC106588330 coding upstream 185233 42028290 ~ 42035215 (-)
LOC110496293 tcpg coding upstream 194217 42037274 ~ 42046633 (-)
LOC110496294 LOC106588328 coding upstream 205044 42048101 ~ 42056179 (-)
G1549861 NA non-coding downstream 191993 41649488 ~ 41649719 (-)
LOC110496274 NA non-coding downstream 197064 41618290 ~ 41645613 (-)
G1549241 NA non-coding downstream 339419 41502018 ~ 41502293 (-)
G1549213 NA non-coding downstream 356334 41485019 ~ 41485378 (-)
G1549194 NA non-coding downstream 368158 41473318 ~ 41473554 (-)
G1549939 LOC106588337 non-coding upstream 29070 41872127 ~ 41873029 (-)
G1549941 LOC106588337 non-coding upstream 31000 41874057 ~ 41875450 (-)
G1549942 NA non-coding upstream 58118 41901175 ~ 41923079 (-)
G1549970 NA non-coding upstream 83672 41926729 ~ 41927158 (-)
G1549971 NA non-coding upstream 84278 41927335 ~ 41927572 (-)
LOC118941164 LOC106588367 other downstream 933087 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1156071 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1449829 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2153031 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 472229 42315286 ~ 42316079 (-)
G1550202 NA other upstream 516091 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1051974 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1787949 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2977706 44820763 ~ 44828808 (-)

Expression


Co-expression Network