G1549939 (LOC106588337)


Basic Information

Item Value
gene id G1549939
gene name LOC106588337
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41872127 ~ 41873029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773480
GGGGCTGGAGGCTTTCAGCATGTCCAGGAGAAGATTGGTCAATAGGAAGTGACCTAGGTGATTGACAGCAAATTGACTCTCAAACCCGTCCACTGTGAAGCTTTTGGGACATAGCATTATACCTGCGTTGTTGATAAGTATGTCCAGACGGGTCTCCGTGGCAATGAATTCCCTGGCAAACTGTCGTACTGACCCGAGGGAGGCCAGGTTTAGTTGTTGCACCACCACGTTAGTATTTCCAGTAGAACTGCGGATCTCTGTTGCAGCGGCCTCTCCCCTGGTGAGGTCTCGGCAAGCCATAATCACCCGGGCTCCTGAGAACACGCAGTACCGTCCGTCTGAGAACACCCTCATCACATTCCTCTCATGGCCATATCCCAGGCCGTCTCCTTGCCGATACCAGTGTTGGCACCAGTGATCACCACAGTCCTTCCATGCAGCTTGGCACGGCTGTGGCATATCCCACCGGCGATCCACTTTCTCAGTAAAACATAG

Function

NR:

description
retinol dehydrogenase 11-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773480 True 495 lncRNA 0.53 3 41872127 41873029

Neighbor

gene id symbol gene type direction distance location
LOC110496284 LOC106588339 coding downstream 30871 41829155 ~ 41841256 (-)
LOC110496283 LOC106588340 coding downstream 59968 41779561 ~ 41812159 (-)
LOC110496281 LOC106588342 coding downstream 120063 41723314 ~ 41752064 (-)
LOC110496279 LOC106588343 coding downstream 150165 41704525 ~ 41721962 (-)
LOC110496277 LOC106588347 coding downstream 200611 41663436 ~ 41671516 (-)
LOC110496288 LOC106588334 coding upstream 73233 41946262 ~ 41962098 (-)
LOC110496289 jtb coding upstream 136820 42009849 ~ 42014114 (-)
LOC110496292 LOC106588330 coding upstream 155261 42028290 ~ 42035215 (-)
LOC110496293 tcpg coding upstream 164245 42037274 ~ 42046633 (-)
LOC110496294 LOC106588328 coding upstream 175072 42048101 ~ 42056179 (-)
G1549888 psb4 non-coding downstream 29070 41841712 ~ 41843057 (-)
G1549861 NA non-coding downstream 222408 41649488 ~ 41649719 (-)
LOC110496274 NA non-coding downstream 227479 41618290 ~ 41645613 (-)
G1549241 NA non-coding downstream 369834 41502018 ~ 41502293 (-)
G1549213 NA non-coding downstream 386749 41485019 ~ 41485378 (-)
G1549941 LOC106588337 non-coding upstream 1028 41874057 ~ 41875450 (-)
G1549942 NA non-coding upstream 28146 41901175 ~ 41923079 (-)
G1549970 NA non-coding upstream 53700 41926729 ~ 41927158 (-)
G1549971 NA non-coding upstream 54306 41927335 ~ 41927572 (-)
G1549972 NA non-coding upstream 54941 41927970 ~ 41928469 (-)
LOC118941164 LOC106588367 other downstream 963502 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1186486 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1480244 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2183446 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 442257 42315286 ~ 42316079 (-)
G1550202 NA other upstream 486119 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1022002 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1757977 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2947734 44820763 ~ 44828808 (-)

Expression


Co-expression Network