G1549972


Basic Information

Item Value
gene id G1549972
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41927970 ~ 41928469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773524
agccaacgagagcgtacaggtcgcaatggtgggtagtatatggggctttggtgacaaaacggattgcactgcgATAGACTTCATCCAATTTGTTGattagggtattggaggctattttgtaaatgacattgccaaagtcgaggattggtaggatggtcagttttacaagggtatgtttggcagcatgagtgaaggatgctttgttgcgaaataggaagccaattctagatttaactttggattggagatgtttgatatgggtctggaaggagagtttacagcctaaccagacacctaagtatttgtagttgtccacgtattctaagtcagagccgtccagagtagtaatgttggacaggcgggtaggtacaggtagcgatcggttgaagagcatgcatttacttttacttacccgcaataatatctgctaaatatgtgtatgtgaccaataagatgtgatgtgattttgatctgaccctgtatatagtatgcttacttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773524 True 500 lncRNA 0.42 1 41927970 41928469

Neighbor

gene id symbol gene type direction distance location
LOC110496284 LOC106588339 coding downstream 86714 41829155 ~ 41841256 (-)
LOC110496283 LOC106588340 coding downstream 115811 41779561 ~ 41812159 (-)
LOC110496281 LOC106588342 coding downstream 175906 41723314 ~ 41752064 (-)
LOC110496279 LOC106588343 coding downstream 206008 41704525 ~ 41721962 (-)
LOC110496277 LOC106588347 coding downstream 256454 41663436 ~ 41671516 (-)
LOC110496288 LOC106588334 coding upstream 17793 41946262 ~ 41962098 (-)
LOC110496289 jtb coding upstream 81380 42009849 ~ 42014114 (-)
LOC110496292 LOC106588330 coding upstream 99821 42028290 ~ 42035215 (-)
LOC110496293 tcpg coding upstream 108805 42037274 ~ 42046633 (-)
LOC110496294 LOC106588328 coding upstream 119632 42048101 ~ 42056179 (-)
G1549971 NA non-coding downstream 398 41927335 ~ 41927572 (-)
G1549970 NA non-coding downstream 812 41926729 ~ 41927158 (-)
G1549942 NA non-coding downstream 4891 41901175 ~ 41923079 (-)
G1549941 LOC106588337 non-coding downstream 52520 41874057 ~ 41875450 (-)
G1549939 LOC106588337 non-coding downstream 54941 41872127 ~ 41873029 (-)
G1549973 NA non-coding upstream 1309 41929778 ~ 41930004 (-)
G1549977 NA non-coding upstream 13257 41941726 ~ 41942166 (-)
G1550006 NA non-coding upstream 44069 41972538 ~ 41972767 (-)
G1550020 NA non-coding upstream 64384 41992853 ~ 41993106 (-)
LOC100135825 tyr non-coding upstream 159766 42088179 ~ 42093200 (-)
LOC118941164 LOC106588367 other downstream 1019345 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1242329 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1536087 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2239289 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 386817 42315286 ~ 42316079 (-)
G1550202 NA other upstream 430679 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 966562 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1702537 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2892294 44820763 ~ 44828808 (-)

Expression


Co-expression Network