G1549996


Basic Information

Item Value
gene id G1549996
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42103892 ~ 42104540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773548
TGAGAGGTTAGTGTGTCTttggggtatgatctttgaccctctaactttctcactcgtcATTAtacacaattcattcaggattttCTGtagtcatggtagcatccacattttttttattttatctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacagcctacccccgcctggatttgaaccagggactgtagtgatacctcttgcactgagatgtagtgccttagaccgctgcgccactcaggagccctaaaTGTAAAGTGtgtagaaacatattatattcttatttaaaaATGCAAGTGAcatcaaaatgacacaatacattatttaccattcattacTATCTGGcacaaaatcatctgaaacacaaccaaaatgaactgcaaatgcatccaacaagtttgtagagtcacaagcttgatgtagtcattgtgtgctaggaatatgggaccaaatactcaaCTTCTACTTCATTCATAAGAATCtttaggggtgtcaataattttgacccctacctttttgagaaaaaaaaattacttgttaaacaaaatctattGTGCaaagcaattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773548 True 586 lncRNA 0.36 2 42103892 42104540

Neighbor

gene id symbol gene type direction distance location
LOC100135825 tyr coding downstream 10692 42088179 ~ 42093200 (-)
LOC110496296 LOC106588326 coding downstream 28460 42056387 ~ 42075432 (-)
LOC110496294 LOC106588328 coding downstream 47713 42048101 ~ 42056179 (-)
LOC110496293 tcpg coding downstream 57259 42037274 ~ 42046633 (-)
LOC110496292 LOC106588330 coding downstream 68677 42028290 ~ 42035215 (-)
LOC110496298 LOC106588323 coding upstream 1064 42105604 ~ 42132219 (-)
LOC110496297 LOC106588322 coding upstream 40618 42145158 ~ 42268090 (-)
LOC110496299 LOC106569884 coding upstream 174985 42279525 ~ 42286932 (-)
LOC110496300 LOC106588320 coding upstream 187127 42291667 ~ 42297772 (-)
stom stom coding upstream 335805 42440345 ~ 42451777 (-)
G1549997 NA non-coding downstream 990 42102448 ~ 42102902 (-)
G1550020 NA non-coding downstream 110786 41992853 ~ 41993106 (-)
G1550006 NA non-coding downstream 131125 41972538 ~ 41972767 (-)
G1549977 NA non-coding downstream 161726 41941726 ~ 41942166 (-)
G1550073 NA non-coding upstream 64526 42169066 ~ 42169326 (-)
G1550104 NA non-coding upstream 87322 42191862 ~ 42192144 (-)
G1550157 NA non-coding upstream 165740 42270280 ~ 42270895 (-)
G1550124 NA non-coding upstream 185325 42289865 ~ 42291075 (-)
LOC110496277 LOC106588347 other downstream 432378 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1195267 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1418251 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1712009 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2415211 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 210746 42315286 ~ 42316079 (-)
G1550202 NA other upstream 254608 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 790491 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1526466 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2716223 44820763 ~ 44828808 (-)

Expression


Co-expression Network