G1550237 (pex11b)


Basic Information

Item Value
gene id G1550237
gene name pex11b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42411727 ~ 42502927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773814
CTGAAGGATCTCTGGCTCCACTTGACCTGGTCCAGTTGGGGCAGGAGGCCAGCCTTGCCGGCCCACAGCACGTTGTCACAGGCGAAGTACATGGCCTTGTTGAGGTGGGCCACAGTCAGACAGAGACGCAACACGCTGTCCGAGAGGTGCACAGCACGTTTCGCTGCCTCCACAGCCTCTGCTGAGTTCCCTAGACgcatcactggagagagagagagagtgacgtgtgtgtgtgtgtgtgtgtgtgtgtgtGCGAGGGAGAaacgacacctctctctctcgctcgatTAGCTGACATCATGGTGTGAGCTGACGTCATggtgggatcctaataaaattctAAACTCTACCTACTGTTTCATAGTAGTCATGGTCACcagtttctctctcagtctcctgCACTGCAAACTCTTCTGGACAGAGTCCAGGAACTCATCtctgcaacacacacatgcacgcatgcaaacacacatttATCAAGACTCCAATGAACATTCAACCATTTTAGCACCGAAAACCGTCCCAGCACAGAGGGCTCatttgtaatggctggaatggaatgaatggaacccAGTCAAACATgtagtttccatatgtttgatatgatccatattttccattccagccattacaatgagcccgtcctcctatagctcctcccaccagcctccactgatgagTATGTTTTTTCGTCAAGAACGCATACTGGAAGAAAGTCCTCTGATGGCTGCTAAACCAAATAATGTTTTATAGAGTC

Function

symbol description
pex11b Predicted to be involved in peroxisome fission and regulation of peroxisome size. Predicted to be located in membrane and peroxisome. Predicted to be integral component of peroxisomal membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder. Orthologous to human PEX11B (peroxisomal biogenesis factor 11 beta).

NR:

description
peroxisomal membrane protein 11B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773814 True 757 lncRNA 0.49 3 42411727 42502927

Neighbor

gene id symbol gene type direction distance location
LOC110496300 LOC106588320 coding downstream 113955 42291667 ~ 42297772 (-)
LOC110496299 LOC106569884 coding downstream 124795 42279525 ~ 42286932 (-)
LOC110496297 LOC106588322 coding downstream 143637 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 279508 42105604 ~ 42132219 (-)
LOC100135825 tyr coding downstream 318527 42088179 ~ 42093200 (-)
LOC110496307 LOC106588314 coding upstream 36400 42539327 ~ 42542965 (-)
LOC110496309 thap7 coding upstream 52797 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 115147 42618074 ~ 42624506 (-)
LOC110496315 NA coding upstream 285593 42788520 ~ 42804428 (-)
LOC110496317 LOC106588307 coding upstream 355944 42858871 ~ 42866233 (-)
G1550231 NA non-coding downstream 2226 42408800 ~ 42409501 (-)
G1550201 NA non-coding downstream 53690 42357725 ~ 42358037 (-)
G1550200 NA non-coding downstream 55067 42356386 ~ 42356660 (-)
G1550198 NA non-coding downstream 61522 42349978 ~ 42350205 (-)
G1550197 NA non-coding downstream 62154 42349295 ~ 42349573 (-)
G1550288 NA non-coding upstream 359 42503286 ~ 42506557 (-)
G1550289 NA non-coding upstream 5668 42508595 ~ 42508853 (-)
G1550417 LOC106588274 non-coding upstream 110768 42613695 ~ 42614584 (-)
G1550421 NA non-coding upstream 121799 42624726 ~ 42625121 (-)
G1550202 NA other downstream 52099 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 95648 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 740213 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1503102 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1726086 40640175 ~ 40685641 (-)
LOC118936491 LOC106588302 other upstream 392104 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1128079 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2317836 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2544753 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2562207 45065134 ~ 45073340 (-)

Expression


Co-expression Network