G1550245


Basic Information

Item Value
gene id G1550245
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42421247 ~ 42423756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773824
gctgagtttatttttgttcattatagaGGTATACAATGTTCATGTTTTCCATTAAATATAAAACCACATCATAAAACAACTATACAAATAATGTATAAATAACTTTTAAAGATTCTGTTACAGACAGTCCAACATGTTGCTGTATtaataggggttagggtgtagggggttacaagttgttcaaatcaaatcaatattGCTGTAAAAGAGAATGTATTCTCAGTCAActcacctggtaaaataaggaatAAATAAATCCAATAATTTAAAAAAGCAAGGTATAGTTGAAAGGGTTTGGGTCCAACATGTAGCTGGTAGTGCCCACTGACTGGAGTTGTAGAAacaggggttagggtgtagggcaGGGTTCGGCGAGTAAAATAAATGTGCCAAGTTTTTTGTAGAAATATATACCTTTTTAATGTTTGGTCAAAAAACACTACAATCAACAGGAATTTAGCAAAAAAAGGCTTAATTTAGAAAATCTGTTCCCAATTTTTCCCACGAATAAAGGTCATGTCTCAAAGTAATCAAAGtatgaatgatcggctatgaaaagtcaactgacatttactcctgaggtgctgacctgttgcaccctcgacaaccactgtgattactattatttgaccctgctggtcatctatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggctcctctctagttttcttcctaggttctggcctttctggggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttgtggtttaaaggctgggtttctgtacagcactttgagatatcagctgaagtaagaagggctttataaatcaatttgatttgatgaaattACGGTTGTTTTCAAGTTTttttagttgtggtcaattttcaAGGTATAAATTATCATTTATTTCCGGCCCCCGATGATCCGCCTGTTAGGGTGTACAGGGTCCAACATGTAGCTGTAGCGCCCCCTGGCTGTggagttgtagtagcagcaggaACTCTTCAGGCATGGCGTGCATGAAGTGACTTGGACCAACACTGTCATAGTAATGATGTGGCAAAGTATTTTGGGATAGATCCAGAGGGAAGGGCCAGAAGCCATACAGATGAACCTGACAAAGAGAGATCTAGActtagaaacaaacacacacaaacacacacacacacttaatctcTTAAGGTAGTCGATCGCATCCGACTGATTGTGGGTTGGCTGATGACTGTATAAAACGATGCGGGATGCATGCTGTCGTTGAGGCCGGTGCAGCCATGGTCATATGTCTTCTCTGTCACTTCGCCAGGTGACACTCAGTCCTTTTTTTCCTGAGCCAACTGCACTCCTTGATGGCAGAGGCTGCACCAGGTGGAACGCTCCGCAGCACCAGGTGGAACGCTCCGCAGCACCAGGTGGAACAGTCCAGAGGGAGGCAGGGTTTATCCCACACTTCTTTAGTGAAGTCTTCAAGTGGTCCTTTAGATGCTTTTTCTGACCACCTGCAGAACGACGGCCCAGTTGTACCTGTCATTCACGTGCTGAAGCTCAAGGACTCGTTCAGGTTCAAGCTTTGTGCTAGCCGCTACTAGAGTCCCAGTGTTGCTCCAGAAATAACAGATGCACGGTGTATATGATCTTCAAAACAACATCTGTTCATGGCTTTTTTGGACCTCTCCTAAGCAGAGGTTAAGACATAGGTGGGCCTGGGTGGACacagacccacccactggggagccaggccctgccAGGCTCATCCAATCAAATTGAGCAAAAAACTAAAAATAATACAATATTGTTACAAAAGTACTCTTCAGTCAAAATTTCTGCAAGCCCACCCACAAATGAATTTCTGGCTACGCCCCTGCTCCAAAGCCTTGAGCAAAGTAGACTGTGAACACCTTTGGAAGGTTTTTCTGCAGTATGGCTACCCTGGGAAATTGGTCAACATCCTGTGTCAGTTCAATGAGGGGGTGATGGTCAGGGTAACAATTGGCGGTCAGGAACCCTTTGGAGTAGGCACTGGTGTGAGGCAAGTGGCGTGTGCTTGAGCCGGTCCTATGTCTTCCTCCTTTGTGTCCCAACACTGCTGGCACAAGGACATGGAAACGTAGAGTGGGGTGACCCTAGACTTCAGATTGGACAGAAACATCTTctgaggcaacacacacacatactaacacctGTTCACAGATCTCCAGAGCAGTGCTGGCCAGCATCAGACCAGTAGAGAGCCGTGGGGCTCGTTGCCCTCGACGACGCCAGAACCTGCCCAGCTCAAACAGGTAGTCTGGGTGGAAGAACACCACTTTCTGTTGGGAGCGGGCCTTACGGAGGGCTTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773824 True 2398 lncRNA 0.45 3 42421247 42423756

Neighbor

gene id symbol gene type direction distance location
LOC110496300 LOC106588320 coding downstream 123475 42291667 ~ 42297772 (-)
LOC110496299 LOC106569884 coding downstream 134315 42279525 ~ 42286932 (-)
LOC110496297 LOC106588322 coding downstream 153157 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 289028 42105604 ~ 42132219 (-)
LOC100135825 tyr coding downstream 328047 42088179 ~ 42093200 (-)
stom stom coding upstream 16589 42440345 ~ 42451777 (-)
LOC110496307 LOC106588314 coding upstream 115571 42539327 ~ 42542965 (-)
LOC110496309 thap7 coding upstream 131968 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 194318 42618074 ~ 42624506 (-)
LOC110496315 NA coding upstream 364764 42788520 ~ 42804428 (-)
G1550231 NA non-coding downstream 11746 42408800 ~ 42409501 (-)
G1550201 NA non-coding downstream 63210 42357725 ~ 42358037 (-)
G1550200 NA non-coding downstream 64587 42356386 ~ 42356660 (-)
G1550198 NA non-coding downstream 71042 42349978 ~ 42350205 (-)
G1550197 NA non-coding downstream 71674 42349295 ~ 42349573 (-)
G1550233 LOC106588318 non-coding upstream 59838 42483594 ~ 42488418 (-)
G1550234 NA non-coding upstream 76030 42499786 ~ 42501294 (-)
G1550288 NA non-coding upstream 79530 42503286 ~ 42506557 (-)
G1550289 NA non-coding upstream 84839 42508595 ~ 42508853 (-)
G1550202 NA other downstream 61619 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 105168 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 749733 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1512622 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1735606 40640175 ~ 40685641 (-)
LOC118936491 LOC106588302 other upstream 471275 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1207250 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2397007 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2623924 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2641378 45065134 ~ 45073340 (-)

Expression


Co-expression Network