G1550233 (LOC106588318)


Basic Information

Item Value
gene id G1550233
gene name LOC106588318
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42483594 ~ 42488418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773810
ATAGTATATCAGTTTATTTATTTGCACGTTCATTGTGTTAACAAATTCAACAAGTCAGCATTAGTGTAATATATTTAGCATAGACTACATAGCATTATGCAGTTTAAACACATTTCAGAGTACTGGTCTTGTTTTGCATCTCCCCCACACACAACATACAACTCTGACCTTCAATTATGACTGAGGCGGTGAATCAATGACAGCCAATGGGATACTCACAACCCATTGATTTCTTTGTCTCTTTTTATTCACACCTCAGATTTGTCTGTACAACACACAACAGCAAAAGAGTGGGATGGGTTGTCATGGAAGGAAAAGGAGAGTGGATTAGAGAGAGGGATTCAGTCAGGGCCAAGGGATAGGAAAAGGGAGGGCACCCCAACAATTGAACACATTCACAGCGAGGGGAGAGCCCTTTGCCATTCCTGGGGGAACAATCACATACGCTAACGACAGGCGGCAGTGCATCTGCCTGATAGTGTCTGGGAACAAACTGTCATTTACACAAGGTTATACTGTATTTACATTTTGATATCTACAAAAAAGATGCTTTGATTAAGCTATGGGTTTAGGGGAGGCCAGCAAAACAGAGGGTAACAAAGCCAGAGCATCTAATTTTGGTTTGGATTATTCCGTGATATGGGACATCGTTGCTGATCTTGCAGAGTGCTTTCTGTGCTATTTACAAAAGGAAATGCTCATAGGAAGAAGAAACTGTTGAATATCAATCACAGGCACCTGTAACATACACAACCCCAGAATCTCAAAGTAAGTCAGAAAGAAACAGTGAGAACATAGAAATAGGAAACTAGAAAATCTGTCAAAGATACAGAAACGGGAGAATGTACACGGTTTCAATTATGATACACCTTGATTTGATCTCCACTAAACCTTCCTGTCATGAAGAGAACTCTCGCCTCTCGCAGTAATTATCTGTCATGCACAGACACGtgagacaaaaaaacaaaaaaacacttgTGTCCTTATCAACAGACACATTGACAGCCATCCTTTCCCACAGAACAATGCTAAGATGCTGTCATCATTCTCCTTTCATCCTCCAAAAATGTTCCACTTTAACACTTTTTAAAATATTGAACGCAACCCTTATTAGCGCAGCTACAGTTAGGAGCCTGAACACCACTCCTTTCTAGATGTACCGTCTAACTCTCCAGCGAGGACAGAGCAATGAATAAAGATGACACACTATCACACTATTCCTCAGCCACCATGTTAGAATCTCCTGGGCAAAGTTGGCCAAACGGTGACAGAGATGCTTTGAGCCTGTGCTCACACTATAAACTTGGGCATTTGTAGCCTACCTTCAGGGCCCCATATGGtaaatacaaaaacacatttccagTCTACTGTCCAGCACATCTTTGCCCAAGCCAAGActaggtggggttatggtgttagGGCTAATGCAATTTTACCTCACTCCAAAGTGCACTTATATCCATATAATTAAATCATGCCCCAGACTGGAAGCCTACtacagagacaaagacaaaagGATAGTCAGAGGACCTTTCTCTGAATTGGAAAGACTACAGTTTGAAAAATGTCTCTAGGTTATCGAAACCTGTGCGactgttgtgattttttttttttttttaaagtgctgTGCTAATTATTCAAACATTATGAAACCAAAAGTCTGAAATGGGTTTCCGAGACAGTGCTTCTTAAATTAATGACAGTTACATTTTGTTTCAACAAGTTGCCTCGATGTATAGTTTCGATGGAAACTGAAGATACTGTGCATGTAATTTAACAAATTTCCAATATCTCATAGCTGTGAGGGAAAACTATAGGACAAAGGACTTGAACTGCCCAGGATATTAGCCTCTTATGTTACAATAACTACAAATAGATATTTGTTTTCAAAAGTATCAAAagggagcaaaaaaaaaaagtttgatcAAATCAACCAGTGATAAAAACAAAAAAGGTTGCTTTGGGCTTTTCAAAGTGCGATCAGATATACAAAATGTTCAGTGCGCAGCCCAGATGTGCATACTGCCTACTCTCAATTCCATGTGGAATGTGATGACTTTCATAGGAAAGGACACAACACTTACGAGTGCCAAAACCGCTATCAATGGTATCTACATAAAACTGTGATATGCCAAGCATTAACCAAAGAAGCTTGTTGAGTGACAACACCACGCAAATAACATGTAATAACAGACATTTGTGGTCATTTATTTGCTAGCTCAAGTTAGCTCAAACCCAAGCTAGCATTGCAGCTAGTTTACAAGGACTCAGTTTGAGCACCTCAGAGGCCGGTGAAGCTGAATGTGTACAATGtttacctgtgtgtgagtgtagggaTATGCAACATTCAAGCTAAGTGGTTAGCAGTGTACacctacagtgagatgcagtgtaTAGACACAGCAAAGAGACAGTGTGCAGTGACAGCTTGATCGCTATTGACTATCATAGTTCCAAAAAATCCTCTGACACAATGGGGACCGTGCTGTGGAGCAACAGCGGTGATAAACAGAGAGCAAGAGCTCGGGGAGAAGGGAGGGCACCAGAACCCGAGCTGACACTTTGAAGCCTTTGTTGAATTCAGTGGATGAGACATTGCAGGAGATGAACATTTGCATTCTTACACAAACTCACCCCacacaaaatgtatttcaaaaagACGGTGAGTTCAAACAAGGATCGACTGAGCCGTTACCAATGACGTGACTATAAATTCTACTAAATGGTGTATTCTAATAAATTGACAGGAGCAAAGCACTGACATGCAAGTGTATACAGGGCCAAATGGCCCCTGTGGAACAGCATATGAACGACAAAGCTCTCTCTGGTAAAATTGGTGATAGACAGACACAAAGTTACAGATCATTTCATGGCCTTCGGCTCATGTGGTCGCTATGACAACGGGTGTACTGTAACAACGGCTTTCGGGTACATTGAGATCCGTCCAATTATAGCTTCCCGTGCCACATGGCTACAGCCTCGCCTCGACCAATCACATCAGGTCTAAAAAATAAATGCACCAATGAAATGATAGGGAGAGCAACAGGGGTCACAAAGTAAAACCAGAAATCATCAATTTACTCTAACGGGGTAGATCCAATCCACTGAGGTTGTGTGCTACTGAGGGAGGGTTCAGTGTAGCAGAGTGATTTTCCATCCACAATGCActcatcgtgcttctacacctgcattgcttgctgttttaggctgggtttctgtacagcactttgtgacatcagctgatgtaagaagggccttataaatacatttgattgattgattgacttatCATAGACACATTGTTATATACTGAACGCAGGTTTTCCAACGTGTACGTGAACGGCAGGTGAATGATGTCCGATTGTTATGCCAGCGTTGGTATGAATCTGCCCCACAAAAATGAAATTCCCCATTTTGTCTCTGCCTCGCTAATATAGGATAGGAAAGGTGGCCTGAACTCATTTGAACTCCTTTTACACtgtgcatgaaaaagctctgactCACGCAGTTTGACTCATGAGTTTCATGGGTATTGTTGCTACATGTGAGCTTACCGATGAAACGTATATGGtcTAGATGAGATCAAGACATCCCTCTAGCCTTACCTGCCCATGACGTAAAACACTTAGCGACATCAGTATTATCCCGTGAACATTGTAATACAGTACTCTATCCTGCCCCATAAATTGACCACACGTCTAATATTACCACTgctgtttaaaaataaaaaaaacgccCCTACTTTAAAAAACAGCCTCAATATAAATTAACCACACCCTCTAATTAACATAAACCCTCCCAGTTTTGTGCAGTACCAGGAGATACTTCCTGGTTTAAAGAGGAATTGGTACACTAGGTTAAGAGAAAGTCTTGCATACTGTATTCTGTGGCCACACTCCTTCCCAGGTGTGTTTTATATTTAACTTGTTCAAGCAAGCAAGTAATTGAATGTTTATACCTATGGGTGACAGGGGCTGGAGAACGAGGGTGGTTGTGACGCTCTCTGATTGGATTAACCACATCCCCTTTACACCCCCACCCAACCGGTAGGACCACATGGATATCGCTAACAGTCTTGAATGTGTAGGCTATTTATTTGTGTATACATTTGAATATGTCTTCCTATATTCAGATCTAGATTTTGAAATACTCAATCAAGTCTTTTGTCGTCAGTGATTCCTAAAAGTCtggtcagatttttttttcagccACGGTGGTCGCCTCATTGGTTGCGGTAATTTTTCATAGAAGAGAGTGGTCCTACCTTACAAGTCCATGCTGGGTGGGGTTATGGTGGTCTGGTTGGGTCTCTTTATTTCAGACAGGAAGGGTtctatttcattattttatttatttttctaagAGAATAGGATTgaaatagtagtggtggtggttttTCGACAGAATACCCACTCCGAGAAATTGCACGATTTTCGAAATTTTGGGGAGATTTTTCTGAGCTGTCCTAATACTCGCCCAGGGTGTGCCACTTGGCAATCTGCCGGCGGGGGTTGTCGCAGACCTCTCTCCAGTGGGTGACCCCAGTGGGCATGAGGCTCTGGCCACCCAGCACCAGGCGGCCCACCACCTCGTTCTTGGTGGTACGGTCGAAGTCGACCACCAGGAACTCCACGGAGACGTCGGCCAGCAGCTCGGCGGGCACGTCATAGATGAATGACTCGTTGAAAACGGGGTTGAGTGTGCACTTCTTCACGTGTGTCTTCTTCTTGGCGATGCGCTTGTGGCTGTAGAACACGTTCACCTTCACGT

Function

NR:

description
synaptotagmin-11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773810 True 4770 lncRNA 0.42 3 42483594 42488418

Neighbor

gene id symbol gene type direction distance location
stom stom coding downstream 31817 42440345 ~ 42451777 (-)
LOC110496300 LOC106588320 coding downstream 185822 42291667 ~ 42297772 (-)
LOC110496299 LOC106569884 coding downstream 196662 42279525 ~ 42286932 (-)
LOC110496297 LOC106588322 coding downstream 215504 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 351375 42105604 ~ 42132219 (-)
LOC110496307 LOC106588314 coding upstream 50909 42539327 ~ 42542965 (-)
LOC110496309 thap7 coding upstream 67306 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 129656 42618074 ~ 42624506 (-)
LOC110496315 NA coding upstream 300102 42788520 ~ 42804428 (-)
LOC110496317 LOC106588307 coding upstream 370453 42858871 ~ 42866233 (-)
G1550245 NA non-coding downstream 59838 42421247 ~ 42423756 (-)
G1550231 NA non-coding downstream 74093 42408800 ~ 42409501 (-)
G1550201 NA non-coding downstream 125557 42357725 ~ 42358037 (-)
G1550200 NA non-coding downstream 126934 42356386 ~ 42356660 (-)
G1550198 NA non-coding downstream 133389 42349978 ~ 42350205 (-)
G1550234 NA non-coding upstream 11368 42499786 ~ 42501294 (-)
G1550288 NA non-coding upstream 14868 42503286 ~ 42506557 (-)
G1550289 NA non-coding upstream 20177 42508595 ~ 42508853 (-)
G1550417 LOC106588274 non-coding upstream 125277 42613695 ~ 42614584 (-)
G1550202 NA other downstream 123966 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 167515 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 812080 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1574969 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1797953 40640175 ~ 40685641 (-)
LOC118936491 LOC106588302 other upstream 406613 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1142588 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2332345 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2559262 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2576716 45065134 ~ 45073340 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G197305 NA non-coding NC_035919.1 CM008322.1 13162293 ~ 13187854 (+)