G1550234


Basic Information

Item Value
gene id G1550234
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42499786 ~ 42501294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1773811
AAATGGCAGGCCATTTTATTATAGCATGTTAATAGAAAATAAATTAAGGAAACAATCATGATCAAGaggaataaaacaaacaaaacattatCCCATATGTGGCACTACCAGATCCACAGAGGGCTGAAATAAGAGCACAACCGGTGCACTACAGGTCAGGGAGTAATAAAGGAATGAGTGTGTATCACTCTAGAGAGGTATTGTACTTGGCATCATCTCTAGTCGCTGAAACACTATATGAAGACAATTAAACCCTGTTGtaggcagacaaaaaaataaaaatgccaGCTACGCCCATCAAAttccattcaaaaaatgtttttaaatccaGTGATTTCTCTCATTTGGATGTGATCGACATATTGCCCAAGCCAACTATCAGCCCGTTCGGGTCAAGTATAGATCAGTGGACCATATTAGGCAATGCTGCATAGTAATGCCTTGTCAACATCACCTGTGTATTAAATATCCCCTGCAACTCAGTTCACACTCTCAAAATATACCCACTCCTACTGAAACATGGCACCAACCGTGTGTACAGTCCGGTCAGCTTACAAACACTAAGCAATAATCGATTGATGGCTTTTCAATTGAAACAGAGGAACCTAAATGCACAGTGAATGCTATCAGAATGTCTTTGTTTTCATCATCTTCTATATTACAATCTTTTAATTATTTTCATCCTTCTCTTTCATTGGCTGGCAAGATAAACCACATCCATTGGGATCCTCCCTTTAATCTTCAAACTCACATCTCACACCCCTTCGTATTTCCCAACCAACCACCTTTAAATCAAACTTTGGAGTTCACTCCTCAGCACCTATGCCACTTTACCTACTATGTGACCTTCTGAATATTCTGCTTCCCCTCTCCAATTCCCCATAATCTCTATCAGCACAGTTCCTGCATTCTCTAAAGCGCACAGAAGACTCATATCTTCAGTAATGATTGTTAGTTTAATTGCCCATTGCAAACACTCAATCTAACTTGGATAAGAGTCATTGGTCTCCTCGTGGGAGTTGGAACTAGGAATTGGGGCTGTAAGGGTACCACTGGAGGACTGTCATATCTcacagagtctctctctctcagtgctcaGAGTGCTGTTTCTTGTGGAAGGTGGAGCGCATGCGGCTCCAGAACGTCTGGCTCCTCCTGGTTTTTCTCTCGCTGCCGCGGACCGATTCTGCCTCGCGCTGGCGAATCTGGCGGACCAGGGCGGCAAAAACCTCGTCGATGTAGTAGCGAAATGCTGCTGAGGTCTCGAAGAAGGGGCACTGGAACTCCCGGGCCAgttcctt

Function

NR:

description
GTP-binding protein Rit1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1773811 True 1301 lncRNA 0.43 2 42499786 42501294

Neighbor

gene id symbol gene type direction distance location
stom stom coding downstream 48009 42440345 ~ 42451777 (-)
LOC110496300 LOC106588320 coding downstream 202014 42291667 ~ 42297772 (-)
LOC110496299 LOC106569884 coding downstream 212854 42279525 ~ 42286932 (-)
LOC110496297 LOC106588322 coding downstream 231696 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 367567 42105604 ~ 42132219 (-)
LOC110496307 LOC106588314 coding upstream 38033 42539327 ~ 42542965 (-)
LOC110496309 thap7 coding upstream 54430 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 116780 42618074 ~ 42624506 (-)
LOC110496315 NA coding upstream 287226 42788520 ~ 42804428 (-)
LOC110496317 LOC106588307 coding upstream 357577 42858871 ~ 42866233 (-)
G1550233 LOC106588318 non-coding downstream 11368 42483594 ~ 42488418 (-)
G1550245 NA non-coding downstream 76030 42421247 ~ 42423756 (-)
G1550231 NA non-coding downstream 90285 42408800 ~ 42409501 (-)
G1550201 NA non-coding downstream 141749 42357725 ~ 42358037 (-)
G1550200 NA non-coding downstream 143126 42356386 ~ 42356660 (-)
G1550288 NA non-coding upstream 1992 42503286 ~ 42506557 (-)
G1550289 NA non-coding upstream 7301 42508595 ~ 42508853 (-)
G1550417 LOC106588274 non-coding upstream 112401 42613695 ~ 42614584 (-)
G1550421 NA non-coding upstream 123432 42624726 ~ 42625121 (-)
G1550202 NA other downstream 140158 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 183707 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 828272 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1591161 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1814145 40640175 ~ 40685641 (-)
LOC118936491 LOC106588302 other upstream 393737 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1129712 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2319469 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2546386 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2563840 45065134 ~ 45073340 (-)

Expression


Co-expression Network