G1550556


Basic Information

Item Value
gene id G1550556
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42701324 ~ 42747352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1774172
GTTCAAATGTTATTTTAGTTGGTTTATAAAGGAACAGTATTACCGTAAAATAGGCTTATAAAAACCGAAGCAAATAAAGAACAAACACATACAATTTCCGATAATGGCTGTGTGGTTAATACTCATTAAATCCTTGCTTTATTctataaaaaaaactttattacAACACAAAGCTTTTCATAgaactgtgtccgtaaaatgtaggGCATCTATCAGAGGGAAGAGTGGACAGCAATTGAAACATACTTTGAGACAAAATTAATATCAGCGATGAGTACAGTAGTGGCATCGTATCCATGGTCAAATCTTTTGCATGCTACTCACTCACTCTCGCCTCTTTCACCCCGCAAGAGTTATGACCACTGTGAGAAATGTCAATTCTACTTCGATAATGGTATTGACTTTTATAAACAAGCTTGTTTGGAGTTGTTTTATTTTTCTAACATCCTGCTGCACAAACCTTGCCATTTTGATTCTTAAGGATGAACATTTCTTAACGCACTTCATGCAGGTATCATACGCAAGGGTGTTAGCACCATGTTTCATGTAAAGTCTGTCGATGACAAACGTCTAAGAAGGCGTATGGTTGTGAGATGGTTGAGATGGACATAAACGCTGAGTTCAAGAGTTGATATGGGTTCCTAAGAgcacagggattttttttttttgttgccccaATTCCAAACCAACCATTCCTTCCATTCCTGAAGACTTTGTTAAGTCACCTCGTGCATCTGAAATATTTGTATTGGTATCAGCAATGTGGTAATAGCCACACCTAGCCCTCTGGTGGGCTTGGTGGAGTTTCCATCATATTGCGTACACCTATGCAGTCCTTTTTGTTTTATGAAGGGAACTCATAAAGGACATAGGGGTGGTGATGTGGGACAGGTTACGTTGGACCACAGAGTCGACACTCAACCAGACATCCCTACAAGGACTCACCTGTCCTGCAGTGTACTCAATAAGATGAAAAGTTCAAATCATTGCAGGCAGAAATATTACTAACAGAACTACAGTCGTTCCCGAGTCCCGAGCCTACAGGCAATCCAATGTGGTGTCAGGGCAATTGGTGTGAATCTGTACGGAAATCTGTGACACTCAATTCAGGATGATACATTACGCTACGTTGAATAAAATAGTGGTCGTACAATATCATGCGAATTGGAGAACATATAGCATTGCAAAGTCTTTGTCTGAGACCACGTTGCTTGTTGCACTGTAACAACAAAGGACAATTACGGGGACAATTTAAGTTGGCGGTTACGGGAACTAACTACAAAGGTTAGGAAGACTAAAATGACAAAGGTTAGGTGAATTTACATAGCAGGTCAATTGGGTTAACGTTAAAAtaagggttaggggaaaggttagctaaaatgctacagaTATCCCCGAGGCGGCTCGATCATgcaacctttggattgctagacTGTAGGGATCATACCTCTTGGAGGTGCTCAGAACTACACAATTATATTTTGTGCGGCTCTGAGGCCAGACTGGGCAATCATATCTattctacacaatacatttctatctgaacgtccTGTAACGTTTGCACCCTCCTGAACAGACCCCAGGTAGTCCTCAGCTGATGGAATATGAATGGAATTGGAAACAGACCAGCTGTTGTTGAAAATGTTATGGGTGGATTTATAAAGTTGATTTGCCAATAATAGTCAATAAACAATGATTGAGAACTGACATGATAAATTGCGGAGATGAGATCGCTGAACACCATTAGCCTGCTGAGGCCTGTTTAAAACCAACAAGAGACCTGGGCTTACAGATGACCCCGCACATTGAATGCAATGGCATCCTAGATAGCTACAATGTGGAGTCCGGAACATATCTGGCGAAAAGTCCATAGGTTTACCTGTTTCCAGTAATATTTTTACTGAATTCACATCTACTATCCATACCTCCTTGTCCATCCTTCTGGATTGTCCAATGTGTggatatctttaaagaaaccgtCTGAACCAAACCGGCACCATACTTCACCTGTGATAGACAGTGCTCAAGACAAGCTACTGCATATCCTACCACTGTCTGTCTACCACGCCTGGGGTTATGTGCCGGTTTGGAGAAAAGGTTTGGAGAAAAGTTTCCTTACAGATCCACACATTATACAATCTGGATGAATGGACAAGGAGTTACTGATTATAGATATGCCTCAgtgatAGGATT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1774172 True 2193 lncRNA 0.41 2 42701324 42747352

Neighbor

gene id symbol gene type direction distance location
LOC110496310 LOC106588521 coding downstream 76818 42618074 ~ 42624506 (-)
LOC110496309 thap7 coding downstream 112406 42555724 ~ 42588918 (-)
LOC110496307 LOC106588314 coding downstream 158359 42539327 ~ 42542965 (-)
stom stom coding downstream 249547 42440345 ~ 42451777 (-)
LOC110496300 LOC106588320 coding downstream 403552 42291667 ~ 42297772 (-)
LOC110496315 NA coding upstream 41168 42788520 ~ 42804428 (-)
LOC110496317 LOC106588307 coding upstream 111519 42858871 ~ 42866233 (-)
LOC118936491 LOC106588302 coding upstream 214624 42895031 ~ 43015119 (-)
LOC110496326 NA coding upstream 248099 42995451 ~ 43005501 (-)
LOC110496330 LOC106588299 coding upstream 481579 43228931 ~ 43258006 (-)
G1550519 LOC106588312 non-coding downstream 16465 42683313 ~ 42684859 (-)
G1550423 NA non-coding downstream 75297 42625795 ~ 42626027 (-)
G1550421 NA non-coding downstream 76203 42624726 ~ 42625121 (-)
G1550417 LOC106588274 non-coding downstream 86740 42613695 ~ 42614584 (-)
G1550583 NA non-coding upstream 12646 42759998 ~ 42760468 (-)
G1550587 NA non-coding upstream 22898 42770250 ~ 42775103 (-)
G1550595 NA non-coding upstream 33644 42780996 ~ 42781356 (-)
G1550596 NA non-coding upstream 34123 42781475 ~ 42781750 (-)
G1550202 NA other downstream 341696 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 385245 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 1029810 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1792699 40902519 ~ 40908744 (-)
G1548517 NA other downstream 2015683 40640175 ~ 40685641 (-)
LOC118940987 NA other upstream 883654 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2073411 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2300328 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2317782 45065134 ~ 45073340 (-)

Expression


Co-expression Network