G1552243


Basic Information

Item Value
gene id G1552243
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44229930 ~ 44232989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1776063
TTGTCATCAACATGTTTATTGAGTTTAACCAAATGGACTGGTGGCTAGCTACAATGGTAGAACCAAGCAAGAAGCGTGGCGAACTGACAATCAggccatttttttttctctctttacgTCCACTATGAATTGCAAAGGTGGCAAGGATTTGGCAATGACCCAAAAAACATTTGGAATCGTTCTGACAGCATTAGGTTTTAAAAGTTTAAATGTAGAAGGGAAAAATAATGAAAGCTCCAGAATCATGTAGTAGGTCAGTCAGCATACAACGTTATCTATGAATTAGTGACAGTCTAGCAGTTGAAAAGAAAGGCTCAAGTAAAGGTCTGGGCTATATTCAGTACAGACTTACAACAGTTCTAAGGCCTGGTCCTGCAGCGCCCCTGTGAGTCGTGGTTTTCAAAACGAGTCAATTAATGACTTATGGAGTTCGAAAGACCTGATTGAATGCAGATATGGATTTCACCAAACATGGGCCACAACAAATGAATGACATCCAATCACACAAACCAGAATATACAGGGATCCCCCACAATGACAATTACAAATAACATACAAATAAGGGCGGGACCAATAGAATGTGAGAAAGGGCTCCCCAAAATAAAAACCATATTGTATTTCAAACATCAACAAAAGGGTTATTCTTACAagctaaaagtaaaataaatctTTCAAAATTTGGTTTAGCATCCAAAATCATAGGACAACACTCAATCAAAAAGGTATCTTTGCTCCAGTTCAAAAGGTTTGAAGGACAAGTCACTCACACCGAAATATCAaggtacacacagtacacactcaaAGCATGTCCCACAGTGAATAGTATAATAAAGAGCAACTACCAAATCAGAATCGTAACAACCATGTACCCAGACAGGTCGTCTACACAGTGTTGAAGTGTTACGTTTTCACAAGTGGCCCAATATTACAATAACCAGGACACCATCTTATTGGACATTGGCTGATGTCCTTCTCATTACATTGTCACCATTAAAGCACCATAAAAGATGGATGACATTGTACATGTATGGACAAATGAACAGTGCAGTGGATATTAAATATATTTCTTGATAGTTCATGTTAAGACATGAGCGATACCTTACGATAAAACCCTCATATTCAAATCTGAACCTTGAAGCCACTTccactgctttaaaaaaaaaaaaatgttatattccttccctctaatcagggactgattaaAACCTGGGATACCAGGTAGGTGCAATTTATTATCAGGTGGAAGTGAAAACCAGCAGTACTCCAGACCTCCTGGGTAGGATTGAATGCCCCTGCCATAGAACAATGTCCTTCCTAATCATATTACACACCTGAAAGTATTGTGCTCCTTCAAAACATGTCACTGGTTAATACCAACAGTTTCACAAGACATTCAGGAATGTTTTTCTTGCTTTTAAGAATGCACATTTCATTTTGGGGTACTTTCTGAAATATAGTTTTCCCTGAACTCTTTACATGTGGGAATTTGATAGGGCTCAATTggaatgtttcttacagaagaaacaTGACAAGCAAATCCATAAGCATGGTAGCAATAGAAAGTGAACAGATAGAAGATGGAAAAAATTTGACCAAAAGTTGAGGACAACAGTTTACctgacaagactgaatccaaacattacacttgattttatgtgcattttttctCTCTCGTGTGCAGTACTCAAgttcagaacggctgtcagtcaaaacccatacagcacTGTGAAGCACAGAACCTGAGCTTTGACGtcatttatagcatgttactCTATAGCCACTGCATTCCAATTTAGTTGCTTATCAGGCATTTTTCAACCAATATACAGGTATGAGTGTAACAGGTTAAGACAGGGCTTTGCAAAGTGGTTTTGTTctcttgtgtttgtgtttatgtgaaTAAATTTGTGACATTCAATAAAAAGTTAATTCTATGGGATCTAAGTGTCAATAAAGACATTTGGTCACCTCCCATGTACAGGCAGCATGCAACATGTTATGTAGCTTTAAAGCGATAGTTTCGCTAGCGACAACTTGCTAGTGATCTAAGAAAAGTTAAATATCTTAAAAGTGAAACACACCACGAGTAAGAAAATACATCACCTATTTCAAAGTCAGGCCGAGGAAAAACGTAAGTACAATTACtattatgtacagtgcatttggagagtattaagaccccttgatttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1776063 True 2192 lncRNA 0.38 2 44229930 44232989

Neighbor

gene id symbol gene type direction distance location
LOC110496344 prcc coding downstream 19841 44205419 ~ 44210089 (-)
LOC110496343 LOC106588565 coding downstream 41422 44185888 ~ 44188508 (-)
LOC110496342 krit1 coding downstream 46789 44169969 ~ 44183141 (-)
LOC110496341 LOC106588568 coding downstream 64791 44158843 ~ 44165139 (-)
LOC110496339 mterf1 coding downstream 217039 44010012 ~ 44012891 (-)
trnal-uaa-4 NA coding upstream 4274 44237263 ~ 44237345 (-)
trnal-uaa-5 NA coding upstream 5073 44238062 ~ 44238144 (-)
trnal-uaa-6 NA coding upstream 5894 44238883 ~ 44238965 (-)
trnal-uaa-7 NA coding upstream 6692 44239681 ~ 44239763 (-)
trnal-uaa-8 NA coding upstream 7513 44240502 ~ 44240584 (-)
G1552245 NA non-coding downstream 18507 44211086 ~ 44211423 (-)
G1552244 NA non-coding downstream 19448 44210247 ~ 44210482 (-)
G1552035 NA non-coding downstream 26702 44202990 ~ 44203228 (-)
G1552034 NA non-coding downstream 28801 44200925 ~ 44201129 (-)
G1551962 NA non-coding downstream 136465 44087693 ~ 44093465 (-)
G1552255 NA non-coding upstream 535 44233524 ~ 44233769 (-)
trnal-uaa-28 NA non-coding upstream 25611 44258600 ~ 44264051 (-)
trnal-uaa-48 NA non-coding upstream 42616 44275605 ~ 44276650 (-)
G1552331 NA non-coding upstream 151249 44384238 ~ 44384491 (-)
G1552348 NA non-coding upstream 177699 44410688 ~ 44411062 (-)
LOC118940987 NA other downstream 597053 43624763 ~ 43668196 (-)
LOC118936491 LOC106588302 other downstream 1214811 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1870302 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1913851 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 2558416 41663436 ~ 41671516 (-)
G1552768 LOC106588550 other upstream 587774 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 814691 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 832145 45065134 ~ 45073340 (-)
G1553544 NA other upstream 1434372 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 1555110 45788099 ~ 45803048 (-)

Expression


Co-expression Network