G1552768 (LOC106588550)


Basic Information

Item Value
gene id G1552768
gene name LOC106588550
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44820763 ~ 44828808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1776616
TATCTGTATGATCCTCATATCACTTTGTTTCTgtatattgagatttaaaatgCCATTAAAGTAAGCAAATTACTCACTGATTGACTGTAGTATAGCATTGCTTCATATCACAATAGAAATTCCATTCATTTGGTGGAGGTGAAAAATGTTTGCTAACAAAATACTTTTCAACTTTTGCAATTTATGAATATTTTTCTAAGGAAACCAGTAGGGTTTTATTGTGAAACGTTCCTATAATTATAATGACATTTCAGAATAGAGCTAGGCTTAAGAAAATAATGGTgattgtaaaaatgtatgttgCCATGGATACTCCATGGCACTGCCTGAAACAGAGCTGTCAAGCTATAAAAACTCAGAGTGGAAGACTCATGAATAACGGATGCCTTCACTTGAAACTTCAAACATAAGGTCATATTCATTGGGCACCAAACAGAAatcagactgaaacagggagtgaCTACATGGACATTGCAAATGCCCTAatgcagtggttctcaaacttttTCAATTTTTCACTCGGGCCAGGGCTCTAGACTAACTTTTTCAGTTGATGGCACCAGCACATGATTTGGTCACACCAATGATGACCTGACCTGTGTTCCATAATGTACATGcattccatacagaaccaggctaatgatgatttttttttaagtagaaTGCCATTGCATGGCTTGACATTCAGGCAAATTTGCCTGTGGCACACCAGGCCAGTGCCAACTGAAAGCTACTGGCCTGAATGAAAACAATACTGGCCCGGGAAAGCAGATGATGCGCACATCatttacattttatatttaatTTTCAGGCTGAGTAAGTAGTCTGTTGCCTATAATGACCTACCCTACATTCACAAAATTACATTTTACATTGATTGTTAAGAGGAGTAAAAAATCTACCCTTTGCACAATCTCAAAAAGGGTGTTATTGTCAGCGATTTTGAACAGTCACTCCACAGTTATTGGACCCTATAAAATCAATTTTATATTTTGGAAAATTCTGTTTTCCTGGTtagatttttcccgattttcatTCTCAAAATCACACTTATTTTGTTAATAGAAAAACTAGTctacaacaatgcttaaaccacatcaggagaccacttttaaGGTCTGGGAACAATTATAATTTGGAGGGTGTAGTTGCTCTTTCATTCAATTGTACACCTAGCAAGAGACTTGTGTTTGGCTAGCTTTGTTTTTGTACTGTACAATGTACAGTGTAAGCTACATGTGATggcagagtttgcaaaacaaatgcccAGCAATTGATACAAATCATCATGATATATTTCTGCCAGGGTGTAGTTTCCCCTTAATTCAACTGTGCACCTATCAAGAGACCGTTGTGTTTGGCTAGCAGTATTTTTGTACTGTACAATGTATAGTGTAGTTTTCATGTGATggcagagtttgcaaaacaaatgccccaCGACTGATACAAatcatcatgatatcattctgccaggtaggtcTACCCAGCAGTCAAATTTTAATTGGAAAGTTTTTTTGGGGAAACCTTACGAAAGTTTAATTCAAAACAGTGCATGATGACTGATTTGTGCATTGCAAAGATTCAGCCAAGACTTCGGACCAAACCTTTTGAATACCTGGTCTGCATACCAATTGTTGCAAAACGATTACTGGTTGAATAAATATTGATAAAAGGAAAAGCTCATTGTGAACCAAAAACGAACATGACCAGCTACATTTATTTCACTGGCACCAAAGTGACCAATAAAAAATTGGTGTCTCACTGCTAATTCAAAGGGTCCCCTgctctaatgaacatgacccagcttTAAGCGATCATAAGCCTATATTAAAAATGACTAGAACTGCTAATCTATCTTCAATATTTGTTTATTTGGGTTGACCAGTATGTTGGCATGACATGACACTGTAAAATGGCCAGCTAACCATGAACTTCAGTCTACAATGTTATTGGCACAATTAACCTTCATAGCTGGATTGATTTATCTCTGTGGTGCCACTCGTATGACAAATCAGGGCCATAACCTCATAAGCACTAAAATATCACTGCGGGCATCCTCTTCAAATAACAACGATGGTACAAACCCCTATTTCTATTTAGGGCACCTCCAGAGTGTAATATGGAATTGAACCCTGCCTATAAAAAGTATATGGTAAATAATTCTCACAACAAATTTCCGTTTGATCAGTTAGTTGAAGCATGGTGCTACCAACACAGGggctgaatcctactacaccggctctgacgctcttcggatgtggcagggcttgcaaactatcacggattacaaatgGAAACCCAGGAGTGCGCTGTCCAGTGATGCAAgcttaccagatgagctaaataccttctatgctcgctttgaggctaGCAACAcaaaccatgcatgagagcaccagctgtcccGGACGGCAGGGAGAGAGgatcctgggattaaacacctccctctgcaactgtatcctggacttcctgatgggccgcccccaggtggtgagggtaggcaacaacactgtCACggtgaccctcaacacgggggcccctcagggatgcgtgcttagtcccctcgtgtactctctgttcaccttCACCCAGAACTGCGTGGCCGTGCACAACCTCAACATTATCATTAAGTCTGCCAATACGACAGTAGTACGCCTGATCACCTGGAAGTGTGGttccaggaaaacaacctctccctcaatatcagcaagacgaaggagctgatcgtggactacaggaaacggaggggcgAGCACTCCCACATCCACATCAACGGAGTtgtagtggagtaggttgagagcttcaagttcctcggtatccacatcactaaggaatcgtcatggtccacacacaccaacacagatgtgaagagggcacaacaacgtcTCTTGAAAAGAgtcggcatgggccctcaaaaagttatacagctgcaccattgagagcatcttgactggctgcatcaccgcctggtatggcaactgcttggcattccACTGCAAGGCGCAagggtagtgcgtaaggcccagaacatcactggggccaagctccgtgtcatccaggacctctatactaggcgttgtcagaggaaggcacaaaactgtctaagactccagccaaccaagtcatagactgttctctctgctactgcacggcatgCGGTACCgatgtctggaaccaacaggaccctgaacaccttctaccctcaagccataagactgctaaatagttaaccaatagctaccccgACAATCTGCATTGACCATTTTTGCatgaactcttttgactcatcacatactctGCTGCTGTTTATCTAtcttgttgcctagttactttatccctacctacatgtacagtacagtcaaacgtttggacacacctactcattcaagggcttttctttctttttacatttttctacattgtagaataatagtgaagacatcaaaactatgaaaaaacacatatggaatcatgtagtaaccaaaaaagtcttaaaTCAATCAAAATATACtctatattttagattcttcaaagtagcacgcttcgccttgatgacagttttgcacactcttggcattctttcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagctcttgttggctgcttttccttcactctgcattccaactcatcccaaaccatctcaatttggttgagattgggtgattgtggaggccaggtcatctgatgcagcaatgcatcactgtccttcttggtcaaatagcccttacatagcctggtggtgtgttgggtcaacttttgactggtactgtacatatctacttcaattacctcatacccctgcacatcaactcggtactggttccccatgtatatagccaagttatcattactcattgtgtatttatttattccttgtgttataatTTCTCTATTATTTCAATGTTTTTCTCTCTGTACAGTTGgaaagggcccataagtaagcatttcactgttagtctacaccttgATTTGATTCCCACACATGAACCATGCTCACAATGAGCAATCTTGCCTGCGTCCCGAAGACTTCTGTTAGCTTCCCGAGCTAAGGACTTGGCTTTACTGTAGCTCAGCGCATGACTTTAGCTTGGGTTTGTGGCACATGGGAGACCTTGGTTCTAAGCCTGGTAGACCACAGTAAATTATTAGGACCTCACCTTTGCTGCTGGGGACCCGTGCGTTCCATTGACAACCACCTCCTGACCGTTGATCACTAGCGCCCCTGTGTGGTTCGGGTGACCGTTGAAACTGCAGGGCAGAGGCATTTCAAAGGTGGAGCCCAGGAGTAGCTCACTCAGCCTATCCACCTCTGCGATGGCATCAGTGAGCAATCTCTCGCCGAGTGGCGCATGGGGCGTGTCGGCCCGGAACAGGTTCCGGGAGTTGGGGCCCCCCGGCAGCATGACCTCCTGACCCCCCGTCACCTCAGCCAGGTCCGAGAACAATGTGACCCGCTCCTGGAGCAGCTCCAGCACCTCCCGGTCCTTCTGCTGGATGTCCGCTGGAAGGAGAGATGAAAGTGGAAAGAGGAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1776616 True 4590 TUCP 0.43 4 44820763 44828808

Neighbor

gene id symbol gene type direction distance location
si:ch73-109i22.2 LOC106588553 coding downstream 117671 44684653 ~ 44703092 (-)
LOC110496833 LOC106588558 coding downstream 165838 44630766 ~ 44654925 (-)
LOC110496351 LOC106588560 coding downstream 283620 44487269 ~ 44537143 (-)
LOC110496350 rpc7l coding downstream 334036 44477196 ~ 44486727 (-)
LOC118936320 LOC106588563 coding downstream 456815 44353210 ~ 44363948 (-)
LOC110496937 LOC106588536 coding upstream 109322 44938130 ~ 44943098 (-)
LOC110496360 LOC106588576 coding upstream 513195 45342003 ~ 45347556 (-)
LOC100499581 LOC106588577 coding upstream 540761 45369569 ~ 45372973 (-)
LOC110496365 LOC106588581 coding upstream 647127 45475935 ~ 45562167 (-)
LOC110496374 LOC106570224 coding upstream 1027925 45856733 ~ 45890268 (-)
G1552703 NA non-coding downstream 104159 44708042 ~ 44716604 (-)
G1552702 NA non-coding downstream 112833 44707166 ~ 44707930 (-)
G1552696 NA non-coding downstream 144653 44675802 ~ 44676110 (-)
G1552682 NA non-coding downstream 160551 44659947 ~ 44660212 (-)
LOC110496357 NA non-coding upstream 16475 44818544 ~ 44856861 (-)
G1552760 NA non-coding upstream 38641 44867449 ~ 44868046 (-)
G1552759 NA non-coding upstream 61862 44890670 ~ 44892103 (-)
G1552794 NA non-coding upstream 65530 44894338 ~ 44895008 (-)
G1552801 NA non-coding upstream 76930 44905738 ~ 44906050 (-)
LOC118940987 NA other downstream 1187886 43624763 ~ 43668196 (-)
LOC118936491 LOC106588302 other downstream 1805644 42895031 ~ 43015119 (-)
G1550202 NA other downstream 2461135 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 2504684 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 3149249 41663436 ~ 41671516 (-)
G1552866 LOC106588536 other upstream 218872 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 236326 45065134 ~ 45073340 (-)
G1553544 NA other upstream 838553 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 959291 45788099 ~ 45803048 (-)
G1554091 NA other upstream 1272440 46101248 ~ 46108102 (-)

Expression


Co-expression Network