G1553701


Basic Information

Item Value
gene id G1553701
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 45800951 ~ 45802614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1777664
tttttatttatttttaaatcgaGGACTAGCCTTATTCTGGGTCTGAGAATACAGGCTGTGAAGTGATAACTAAATGGCAGTATCAAATATGAACACaacattaaatacaaaaataacaaatgaTCGTTTTAATAACTGCGATAGAAAAAAGTTGACTTGTCAGTAACATAAAAAGAGAGCCTGTCTGTAGTCCAGCGGTTCATAAAGTCTAATATTGAAGACAGATTTGCTCCCATTGGGCATCACACAAAGCAATGGGAAGAACCAATCAGTATCTGTATTTTGTGGAGTAGTCCTTTGGAGATACGACCAGACCTCGCCCTTTTCTCGCCCCTCGGTAAACGGTCTCAACAATGTCAATCATCTCCTGCTTGTCCTCCATGGTCcagttgatcttgttgttgttacCGGTCCCCAGATCTATCATGATGTGCTTGTTCCTGAAGAAGAACATGACAGTGCAAGGGTCATACAGCTCGTACATCTTGTTGAAGTCCGGCACCTCTGTGATGTCCACCAAATAGATGACTGCAAAATTTTTCACCTTTTCAGCTATGCTGTACAACACCTCGTCCATTTTCATACATGTTGGGTCCCAATCGTGTCCAAACCTGATAACCAGGGCTCTGTCCTCCTCGGATAGAATGGCTTGGTCGACCTGCCAGCCGTTGTGGAGATGAGGTAGCATGTACGACATATTGATGCTGCAGTGTTAGCGCGTATCTCCGTATGAAATTATTCAAACCCCAAAGCGTGAATTGAAACAAATCGGTAGCCTGGGTCTGTCAGTGAAAAAACGAACAAgaaagtggcttctattttggtcgtatagttataacagccacaaagtcataaaccccgcctatttctactATTTATCTTTTTAACGTTTGATtttaaccctcaccttaaccacactgctaagcctaaccttaaattaagaccaaaagcgacattctttTTTTCAGGAATTTTTACGATATAGAAAATGTTGACTTTGTAACTAGTGGAAATCCTG

Function

NR:

description
thioredoxin-like protein 4A

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1777664 True 1018 lncRNA 0.41 4 45800951 45802614

Neighbor

gene id symbol gene type direction distance location
LOC110496365 LOC106588581 coding downstream 238784 45475935 ~ 45562167 (-)
LOC100499581 LOC106588577 coding downstream 427978 45369569 ~ 45372973 (-)
LOC110496360 LOC106588576 coding downstream 453395 45342003 ~ 45347556 (-)
LOC110496937 LOC106588536 coding downstream 857853 44938130 ~ 44943098 (-)
LOC110496357 NA coding downstream 944217 44818544 ~ 44856861 (-)
LOC110496374 LOC106570224 coding upstream 54119 45856733 ~ 45890268 (-)
LOC110496375 LOC106588593 coding upstream 109242 45911856 ~ 46028798 (-)
LOC110496377 LOC106588592 coding upstream 237037 46039651 ~ 46056951 (-)
LOC110496378 LOC106588595 coding upstream 258430 46061044 ~ 46074477 (-)
LOC110496379 LOC106588596 coding upstream 277883 46080497 ~ 46142731 (-)
G1553532 NA non-coding downstream 140977 45659662 ~ 45659974 (-)
G1553523 NA non-coding downstream 149469 45651240 ~ 45651482 (-)
G1553503 NA non-coding downstream 170944 45629766 ~ 45630007 (-)
G1553473 NA non-coding downstream 206897 45593786 ~ 45594054 (-)
G1553721 NA non-coding upstream 31097 45833711 ~ 45833951 (-)
G1553988 NA non-coding upstream 47370 45849984 ~ 45850330 (-)
G1553990 NA non-coding upstream 48813 45851427 ~ 45851740 (-)
G1554026 NA non-coding upstream 100719 45903333 ~ 45903538 (-)
G1554041 NA non-coding upstream 118829 45921443 ~ 45921754 (-)
G1553544 NA other downstream 133211 45667361 ~ 45667740 (-)
G1552866 LOC106588536 other downstream 713165 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other downstream 727611 45065134 ~ 45073340 (-)
G1552768 LOC106588550 other downstream 972143 44820763 ~ 44828808 (-)
LOC118940987 NA other downstream 2168074 43624763 ~ 43668196 (-)
G1554091 NA other upstream 298634 46101248 ~ 46108102 (-)
G1555168 NA other upstream 1109363 46911977 ~ 46912915 (-)
G1555543 NA other upstream 1740946 47543208 ~ 47546614 (-)
LOC110496837 LOC106588626 other upstream 2102225 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 other upstream 2180269 47982726 ~ 47986560 (-)

Expression


Co-expression Network