G1554248


Basic Information

Item Value
gene id G1554248
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 46286967 ~ 46288146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1778285
ctgtaggtctactaaccatgtctgtactgtagttctactaaccatgtctgtactgtaggtctactaaccatgtctgtactgtaggtctactaaccatgtctgtactgtaggtctactaaccatgtctgtactgtaggtctactaaccatgtctgtactgaaggtctactaaccatgtctgtactgtaggtctactaacaatgtctgtactgtaggtctactaaccatgtctgtactgtacagatatggttagtagacctacagtacagacatggttagtatacctacagtacatacatggttagtagacctacagacatggctagtagacctacagtacagacatggttagtatacctatagtacagacatggttagtatacttcagtacagacatggttagtagacctacagtacagacatggttagtagacctacagtacagacattgttAGTAGACCtccagtacagacatggttagtagaccttcagtacagacat
>TU1778286
ctgtaggtctactaaccatgtctgtactgtagttctactaaccatgtctgtactgtaggtctactaaccatgtctgtactgaaggtctactaaccatgtctgtactgtaggtctactaaccatgtctgtactgtaggtctactaaccatgtctgtactgtaggtctactaaccatgtctgtactgaaggtctactaaccatgtctgtactgtaggtctactaacaatgtctgtactgtaggtctactaaccatgtctgtactgtacagatatggttagtagacctacagtacagacatggttagtatacctacagtacatacatggttagtagacctacagacatggctagtagacctacagtacagacatggttagtatacctatagtacagacatggttagtatacttcagtacagacatggttagtagacctacagtacagacatggttagtagacctacagtacagacattgttAGTAGACCtccagtacagacatggttagtagaccttcagtacagacat

Function

NR:

description
zinc-binding protein A33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1778285 False 500 lncRNA 0.41 2 46286967 46288146
TU1778286 True 526 lncRNA 0.41 2 46286967 46288146

Neighbor

gene id symbol gene type direction distance location
LOC110496379 LOC106588596 coding downstream 144236 46080497 ~ 46142731 (-)
LOC110496378 LOC106588595 coding downstream 212490 46061044 ~ 46074477 (-)
LOC110496377 LOC106588592 coding downstream 230016 46039651 ~ 46056951 (-)
LOC110496375 LOC106588593 coding downstream 258169 45911856 ~ 46028798 (-)
LOC110496374 LOC106570224 coding downstream 396699 45856733 ~ 45890268 (-)
LOC110496382 LOC106588622 coding upstream 289312 46577458 ~ 46640870 (-)
LOC110496383 LOC106588620 coding upstream 384368 46672514 ~ 46756077 (-)
LOC110496384 LOC106588605 coding upstream 490949 46779095 ~ 46822848 (-)
trappc9 trappc9 coding upstream 569315 46857461 ~ 47141015 (-)
LOC110496386 LOC106588618 coding upstream 860146 47148292 ~ 47153777 (-)
G1554213 NA non-coding downstream 61 46223932 ~ 46286906 (-)
G1554172 NA non-coding downstream 68643 46218020 ~ 46218324 (-)
G1554041 NA non-coding downstream 365213 45921443 ~ 45921754 (-)
G1554026 NA non-coding downstream 383429 45903333 ~ 45903538 (-)
G1553990 NA non-coding downstream 435227 45851427 ~ 45851740 (-)
G1554252 NA non-coding upstream 5240 46293386 ~ 46293594 (-)
G1554262 NA non-coding upstream 11616 46299762 ~ 46299971 (-)
G1554571 NA non-coding upstream 63453 46351599 ~ 46353376 (-)
G1554639 NA non-coding upstream 158075 46446221 ~ 46446427 (-)
G1554667 NA non-coding upstream 197912 46486058 ~ 46515828 (-)
G1554091 NA other downstream 178865 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 483919 45788099 ~ 45803048 (-)
G1553544 NA other downstream 619227 45667361 ~ 45667740 (-)
G1552866 LOC106588536 other downstream 1199181 45047680 ~ 45087786 (-)
G1555168 NA other upstream 623831 46911977 ~ 46912915 (-)
G1555543 NA other upstream 1255414 47543208 ~ 47546614 (-)
LOC110496837 LOC106588626 other upstream 1616693 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 other upstream 1694737 47982726 ~ 47986560 (-)
G1556577 NA other upstream 2068467 48356613 ~ 48356847 (-)

Expression


Co-expression Network