G1555314


Basic Information

Item Value
gene id G1555314
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47190003 ~ 47195506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1779455
ATAGGTTATTTAAATACAATCATAGTTCACTCAGTCCCTTGCAGATTATTTAATAGGAAAACTGAACTCTAATCTTCAAGGgattaaaataacaaaataaggGTATTGGTGTTTATAACTTTATATGATTATTGGCCCTCAGTCATAATAGCATCCCAACTGTCTTTTGTTAGCAAGACAATGTGAGAAACCACAGGTGTCCACATTCCACAACCCAGCTTCTGGTTACAACCAGGGGGAAAGAACATCTAATATGAATTCAACTACTCTGAAGAGTGTTACTGATTCTAGAACATAACAGAATGGGATAATGAGGGGTTCCATTGCCCAAAAACATGTATGGCTCCTCTGTTTTccattagttaaataaaggttaaataaaaataaaatacaaattatagGTTTTCAAATGGAATCAAGGCTACAATTTATATCCAATCGTGCCTCTAAATTCAAAAAAGACTATTGCTTCAGTCAACCTCTAGTGCTATGAGAATGATCATCTATCATAAACATTGTCCAAGGATGCTACTAACAATAAAAAAGGccacctagcctggtcccagacctgtttgttctGGATAGACAACTCCTATGGCCATTGGCATGCCAGCACtagtagatctgggaccaggcttggaCATACCATACAAAATGGTTGACGTAGTACACACAAACAGAGCCACTTTAGGCCCTTTGCACCATTTTCAAAACTACTGACTGGAATTATACACAAGTTTGAGAGTGCATCTTTAACTACAAGCCCCACTGTTTGTTCACAAGAAGCAGAGCTATTCTCCTGCATCTCAGATGATGTTCATCACTCACCGACAATATCAGTCATTGACTTCGGGAAGGAGGGACAACCCTTCTGCTGTTTAGTTTTAATCTACCTTTCTATTATATGGCACCTACACTCATAGGAAaaaaacctaaaagggttatttggctgtccccataagagaagcctttgaagaaccatttttggtcccaggtagaacccctttgagttccatgtaagacccttttcacagagggttctaAGTGGAACCAGAAAGAGTTCAGCCTGGAACCAAAACGGGTTCTACtacggggacagctgaagaaccctttttgaacCCTTTTTCTGGGAAAGTCTGGTAAACAGAGTTAACTATGGATCATTTAAAAGGTCTAATAaagtctagtgtattatatacaatacttacagttgaagtcggaagttcacaaacacttaggttggagtcattaaaactcgcttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcggttaggacatccacttagtgcatgacaagtaatttctccaacgattgtttacagacagattatttaacttataattcactgtatcacaagtccagtgggtcagaggtttacgtacactaagttgactgtgcctttaaacagcttggaaaattccacaaaaggatgtcatggctttagaagcttctgataggctaattgacataatttgcgtcaattggaggtgtacctgtggatgtatttcaaggcctactcaaactcagtgcctctttgcttgacatcataactgtatatcaaacaTACTGTCATTGACAATTTACATCATTTTAGAAAACCCTTTGTGGTAATAAGTAAGTGTATCCAAATGTATTGTTATAGGTAGTCATCTGCTACGATATTCAGTTATCAGCAATTCCCCAAAAAGCCACAGGATTCAAGAAAATATTTATGTCCACAGAGACATAGAACATGCAGCCAggacatgcacactcacacatccactgacagacacactcactcatGCATTCAGGCACAAACTTGCTTCATAACAGAACAGTGATGAGTTTTGATATAATATAGTATGGTTTGGTATTGCATGTAGAAAATTAAGGGAACTAAGGAGGATAGTTCATttacaatataaatataaattaaaACAGGATATTTGAGATTATACAATGTTACTTAAGACATCACTTGGTCTAATATTTGCGCATGAACATGAAAGGAAAAATATGAGAAAGAAGCCATGGTACCTCTAGGCATAAGCACACCAAAGGAGTGTAAATACCCTAGAAACAATTGGTATCTTGGCATAAAATCGCCAAACAGCTACAGAAATAGTGTAAAACTGCCTTGACTGTGAATGTCATGGAAAACAACAGAAGGATCTTTAAAAACCTACACCAATATATacgttgtttgtttttgttttttttacatataaTGTGGGGTTATTGCAGTAGTAGATCAACATCGATCACATTTGGTGGAATTTTAAAGAATGAAGTCCGACAGGAGAGAAAGCAGGAATGTGACATTTCACAATGTCCTTCTAATCTCATCTGAGACAGCAGGAGTGGCACTCTggcacaggaggagaggagaccccAGGATATTAAGCCAAAGACTTGACTGCGTTTCACACTATCGTGCCGACCCAAACCAAGCTGTGCTGGCTCAGACCTTTTTCCTTTCAGCGCGGTTACACATTATGCTGGATGCGTAACCAAGCCAGCTCAGTACATCGGTTCAGTCCAGCTCGGTAGTGTGACAAGGATATTGGTGTGTTCAACCTGGAGGACCCAGCAGGCTACCTGCTGTTTCTGGCAGCTCCATGGCTAAAGAGAGAAAGCTCAAGGCTCAGCGCTTTGTGGTTTCACTCCAAACAATGAGGGGATTTGAACCTGCCACCGCAGAAGGAAGCCATGGCAATGGATTTTGTGTGCCAACCATCATCTAGGATTAGCCAGTGTTTGAAAGTAGGATACTACATACCAAATCAATATAGATGGTATAGTCTAAAAATGTAGTTTGATATAAATTGAGACATTTATGTACATACACATTATCCAGGAAGACCCATGATAGAAGACCATTGATTTCAGGCACCAACTATATGAATTCATTTAATTCTTTGAAGAACCCAGTCAGAGCTAGGAGTCAGAGGTACTTATTTCTTCTAGGGCACATGTTGATGTTGGAGTTTGAGTGTTCAGGATCAGAAAGCGGTGATCCCTCTCCTGTAGGGACTGGGAAGATCTCCATTTAGCACACTCACAtcctagaacacagaacacaaatgAACTCTGCAGCATTCCAGAACATCATGCATTCCATTCCCATCTGCAGGTGGAGTCCAGAGTTATGAGTCCAGGGTTCCAGAGGTTACCATGGCCACTGTATGAAGTATCCAAATAATCCAACACACTTAATGAGATTATCTGTAATCCCGTTTTGAAAAAAGCCACCATTAAAATGGGTCTAAACATACAAATGTCAATGGGTTAAGAAAAATACTAATATTTAAATAAGATGCAGACAGAAGCAGTTCAACTGTGCTCATTGATATCACACAAGATGAGGCATCACTTGCTAATAGCAGCGTTTTGAGAGTTGTTATCCTGGATACAGTCCACAGTAGTAGATAGGTAGAATTCATTGAAACAACAAACACACTCTTGGTGAATCACAGGTTATTAAAAGTTGCAGTAATAGGAACTGTATCAAACCAAGCGTACCATGCCAACGCAATAACACATTCCTTGAAAGGCATTAAAGTGAAATATCAAGATGGAGTATTTGATTTATATCAGAGTATGGGAAGCACTGAGTCAGTGGATCATCATCATAGTCCCATGTCATTCAAATGGATGGTGGGTGTTGGTTTCAgcatggcagagagagaaaggcaagGATGCTGCTGTCCCTGTGGGAGACAAGACTACTACCCCTGAAAGAAAGAACAACCCctaccccctccaccactaccatcGCTACTGTAATCTACAGAGCCGGCAACATCCTCCTCCACATTCCTAGGTAATGGATGGTTATGATGGTCTATAACCATAtactaggccttcattgaaaatcaAAACATTTGAAAATTGCATAAACATTTATGGACTTGGGATGTTTGTGGAGGgcattaaaatatttaaaagtaAGCTACCGTCCATCAAGAACAATTACTCTCAACCCCAAAATAAACAAACAACTAAAATTGCCATCCAAATGTATTCCAGCTTCAGTAGGGCCACACCACCAGTGAAAGCCAGGTTGCCTGGTCCTACAAACAAACAGGCTTTGTGCTTAGTTGAGTGGAGGATGTTTTTGGCCTTCTCTTCATTGTCCTCTCATTGGTTTGTATGTTGCTGGGTTGTCACAGTTCCATGTCTTTTTCCCTCTCCACCCTCACAATCAGAGTTGAGTAGGTGTGACATCTCCCACCTCAACAGTCACTTTCAACCTGCAGAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1779455 True 4288 lncRNA 0.40 2 47190003 47195506

Neighbor

gene id symbol gene type direction distance location
LOC110496387 LOC106588616 coding downstream 27176 47157965 ~ 47162827 (-)
LOC110496386 LOC106588618 coding downstream 36226 47148292 ~ 47153777 (-)
trappc9 trappc9 coding downstream 48988 46857461 ~ 47141015 (-)
LOC110496384 LOC106588605 coding downstream 367155 46779095 ~ 46822848 (-)
LOC110496383 LOC106588620 coding downstream 433926 46672514 ~ 46756077 (-)
LOC118940995 NA coding upstream 29490 47224996 ~ 47228743 (-)
LOC118941173 NA coding upstream 43626 47239132 ~ 47241438 (-)
LOC118941174 NA coding upstream 53154 47248660 ~ 47250967 (-)
LOC118941176 NA coding upstream 62644 47258150 ~ 47292208 (-)
LOC110496393 LOC106588612 coding upstream 131443 47326949 ~ 47328359 (-)
G1555306 NA non-coding downstream 15491 47174235 ~ 47174512 (-)
G1555305 NA non-coding downstream 16282 47173512 ~ 47173721 (-)
G1555301 NA non-coding downstream 24006 47165782 ~ 47165997 (-)
G1555293 NA non-coding downstream 46695 47142592 ~ 47143308 (-)
G1555289 NA non-coding downstream 59673 47129944 ~ 47130330 (-)
G1555331 NA non-coding upstream 25226 47220732 ~ 47220956 (-)
G1555454 NA non-coding upstream 103775 47299281 ~ 47299510 (-)
G1555456 NA non-coding upstream 105676 47301182 ~ 47301528 (-)
G1555458 NA non-coding upstream 108337 47303843 ~ 47304298 (-)
G1555467 NA non-coding upstream 125640 47321146 ~ 47326023 (-)
G1555168 NA other downstream 277088 46911977 ~ 46912915 (-)
G1554091 NA other downstream 1081901 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 1386955 45788099 ~ 45803048 (-)
G1553544 NA other downstream 1522263 45667361 ~ 45667740 (-)
G1552875 LOC106588536 other downstream 2116663 45065134 ~ 45073340 (-)
G1555543 NA other upstream 348054 47543208 ~ 47546614 (-)
LOC110496837 LOC106588626 other upstream 709333 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 other upstream 787377 47982726 ~ 47986560 (-)
G1556577 NA other upstream 1161107 48356613 ~ 48356847 (-)
G1558535 NA other upstream 2772390 49967896 ~ 49968608 (-)

Expression


Co-expression Network