G1555469 (LOC106588611)


Basic Information

Item Value
gene id G1555469
gene name LOC106588611
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47332588 ~ 47410478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1779667
AAACATTTATTGAGACACTCAGAACACATGGAACAGAACAAAGATGTCACTACAGTCATCAAGTTTCTGTCACAGGAATGAGACTAACAGGAAGCCAGCATCCCATGACGAcagaaaaggggagagaaagagagactgtgaTGAAGAGAGTAACATAGGGGTGATTCAATTCAACTGTAACATCGGTGCTGGAAGTTGCTTTTGATAAGGATTCATAGTGGTTGTTTTGTTTTCTTGGGCAGAGTAAGAGTGCAGAGGGGTATGGAGGGTTGTCTGGGGAACGACAGCAACGTCTCTCAGCTGAATTTGGCTTTAGAGAAGTCCATCTCCGGGTGCTGCGACATGAACCTGGAACACAATGACGGGGGTCACATCATGCAGTCTGAACAGTGAAagagtagcctggtcccagtcgACAAGGAACTGGTAAATGCCAATAGGAGTTTGcaagactacagtgccttgcgaaagtattcggcccccttgaactttgcgaAGTTCTTTGATTTTGGGCTCGTCGTCTGCGTTCTtcctcttcttttcctcctcttcctcagctAGCTTGGCAGCCCTCTttgccttctctctcttctccttctcctgcctcttctccttctctctgtgggCCTTCAGGGCAATACCACTGTGGTGGGCAAACGACTCCTTCACCAGCTGGGGACAGAGGGGTCGTCACTaggtaacacagccacaaagtcataaacccctcACTCacatttctacaatttctcttcttaaaatctgattttaaaactTATCCTAaaccacactgttaaccttatgtataaccctaaccttaaaataaGACCAAAAAACTGTTTTGTTTAGAtcatttttacgatatagccaattttTTACTTTgtgctatctagtggaaaccgg
>TU1779664
cttctcaGCTTTCTCAGCTGGAGCTACTGCATTTGTggcctctttcttctcctcttgtTTCTTTTGCTGGTCGATTTCAGACTGAAGTCTCTCTGCCTCTTCGTCTGTCAGTTCTTTGATTTTGGGCTCGTCGTCTGCGTTCTtcctcttcttttcctcctcttcctcagctAGCTTGGCAGCCCTCTttgccttctctctcttctccttctcctgcctcttctccttctctctgtgggCCTTCAGGGCAATACCACTGTGGTGGGCAAACGACTCCTTCAC
>TU1779668
ttttttttttaaatgttcCAAACATTTATTGAGACACTCAGAACACATGGAACAGAACAAAGATGTCACTACAGTCATCAAGTTTCTGTCACAGGAATGAGACTAACAGGAAGCCAGCATCCCATGACGAcagaaaaggggagagaaagagagactgtgaTGAAGAGAGTAACATAGGGGTGATTCAATTCAACTGTAACATCGGTGCTGGAAGTTGCTTTTGATAAGGATTCATAGTGGTTGTTTTGTTTTCTTGGGCAGAGTAAGAGTGCAGAGGGGTATGGAGGGTTGTCTGGGGAACGACAGCAACGTCTCTCAGCTGAATTTGGCTTTAGAGAAGTCCATCTCCGGGTGCTGCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1779667 False 900 lncRNA 0.45 2 47332588 47339837
TU1779664 False 282 lncRNA 0.51 2 47332819 47333224
TU1779668 True 361 lncRNA 0.43 2 47339496 47410478

Neighbor

gene id symbol gene type direction distance location
LOC110496393 LOC106588612 coding downstream 4229 47326949 ~ 47328359 (-)
LOC118941176 NA coding downstream 40380 47258150 ~ 47292208 (-)
LOC118941174 NA coding downstream 81621 47248660 ~ 47250967 (-)
LOC118941173 NA coding downstream 91150 47239132 ~ 47241438 (-)
LOC118940995 NA coding downstream 103845 47224996 ~ 47228743 (-)
LOC110496398 LOC106588638 coding upstream 226043 47636521 ~ 47647411 (-)
LOC110496399 NA coding upstream 396601 47807079 ~ 47808361 (-)
LOC110496837 LOC106588626 coding upstream 480102 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 coding upstream 572248 47982726 ~ 47986560 (-)
LOC110496402 LOC106588641 coding upstream 591408 48001886 ~ 48022110 (-)
G1555467 NA non-coding downstream 6565 47321146 ~ 47326023 (-)
G1555458 NA non-coding downstream 28290 47303843 ~ 47304298 (-)
G1555456 NA non-coding downstream 31060 47301182 ~ 47301528 (-)
G1555454 NA non-coding downstream 33078 47299281 ~ 47299510 (-)
G1555331 NA non-coding downstream 111632 47220732 ~ 47220956 (-)
G1555531 NA non-coding upstream 70867 47481345 ~ 47481802 (-)
G1555532 NA non-coding upstream 77811 47488289 ~ 47490122 (-)
G1555542 LOC106570245 non-coding upstream 94824 47505302 ~ 47505882 (-)
G1555556 NA non-coding upstream 117965 47528443 ~ 47528646 (-)
G1555544 NA non-coding upstream 131645 47542123 ~ 47543181 (-)
G1555168 NA other downstream 419673 46911977 ~ 46912915 (-)
G1554091 NA other downstream 1224486 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 1529540 45788099 ~ 45803048 (-)
G1553544 NA other downstream 1664848 45667361 ~ 45667740 (-)
G1552875 LOC106588536 other downstream 2259248 45065134 ~ 45073340 (-)
G1555543 NA other upstream 133082 47543208 ~ 47546614 (-)
G1556577 NA other upstream 946135 48356613 ~ 48356847 (-)
G1558535 NA other upstream 2557418 49967896 ~ 49968608 (-)

Expression


Co-expression Network