G1555544


Basic Information

Item Value
gene id G1555544
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47542123 ~ 47543181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1779778
gagagattaatAGAAACTCGGTTTACCcctttatctgtggattaattgtcggtgtagaggaccttgtgcatttcatgtaaaataacaacccaatgtttatttcccaggacaaattagctagcaacagcaagctagctaagttgccataaatgtttaatgctgttcaacctgtccccaaatgaatatagttggtttAATAAGGTTTTTGATATTTCGTGTCCTGATCGcatctggtgtgggtggacaaaatcaacatgcggtctggtcagcatgttagggtgAATTCAGTTTCCTGTTCAGTCAATTCAAGGAGTAGATAAATCCTTAGAACACAATGGAGTATATTTTATTcagaaagtaaaaaataataaataaatcacATCCTAAATGGACTGACTCAAACCTTATCAAAGATCCATTATAAACCAGGCCGAGTCTCACCTGGGAGGCATGGGCCCACAGAGTACAGAGCAGCAGTTAGTCAGGATGTTGTTATAGCTGTAGGGGTTACCGGTGTCCTCCGCCTCACTCTTCCCCGACCACGAGCCTTTGATCTGGGAACAAAAGAGACACACAAGATTGACCATCAGTCCTCATCCTAGACCAGTTTTAGTTCATTTGTCACGGATCAGGCACAACAAACACGTCaccacatgtacagttgaagtcagaagtttacaaacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatgtcttgttaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacaccagtcatttttccaacaattgtatacagacagattatttcactcatatttcactgtatcacaattccagtgggtcagaagttcacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttatgagaggctaattaacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggccaaccttcaaactcagtgcctctttgcttgacatcatggggaaatgaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1779778 True 1059 lncRNA 0.40 1 47542123 47543181

Neighbor

gene id symbol gene type direction distance location
LOC110496393 LOC106588612 coding downstream 213764 47326949 ~ 47328359 (-)
LOC118941176 NA coding downstream 249915 47258150 ~ 47292208 (-)
LOC118941174 NA coding downstream 291156 47248660 ~ 47250967 (-)
LOC118941173 NA coding downstream 300685 47239132 ~ 47241438 (-)
LOC118940995 NA coding downstream 313380 47224996 ~ 47228743 (-)
LOC110496398 LOC106588638 coding upstream 93340 47636521 ~ 47647411 (-)
LOC110496399 NA coding upstream 263898 47807079 ~ 47808361 (-)
LOC110496837 LOC106588626 coding upstream 347399 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 coding upstream 439545 47982726 ~ 47986560 (-)
LOC110496402 LOC106588641 coding upstream 458705 48001886 ~ 48022110 (-)
G1555556 NA non-coding downstream 13477 47528443 ~ 47528646 (-)
G1555542 LOC106570245 non-coding downstream 36241 47505302 ~ 47505882 (-)
G1555532 NA non-coding downstream 52001 47488289 ~ 47490122 (-)
G1555531 NA non-coding downstream 60321 47481345 ~ 47481802 (-)
G1555469 LOC106588611 non-coding downstream 131645 47332588 ~ 47410478 (-)
G1555543 NA non-coding upstream 27 47543208 ~ 47546614 (-)
G1555566 NA non-coding upstream 4026 47547207 ~ 47547557 (-)
G1555567 NA non-coding upstream 4713 47547894 ~ 47548109 (-)
G1555575 NA non-coding upstream 17426 47560607 ~ 47560823 (-)
G1555581 NA non-coding upstream 19413 47562594 ~ 47562850 (-)
G1555168 NA other downstream 629208 46911977 ~ 46912915 (-)
G1554091 NA other downstream 1434021 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 1739075 45788099 ~ 45803048 (-)
G1553544 NA other downstream 1874383 45667361 ~ 45667740 (-)
G1552875 LOC106588536 other downstream 2468783 45065134 ~ 45073340 (-)
G1556577 NA other upstream 813432 48356613 ~ 48356847 (-)
G1558535 NA other upstream 2424715 49967896 ~ 49968608 (-)

Expression


Co-expression Network