G1555960 (LOC106570253)


Basic Information

Item Value
gene id G1555960
gene name LOC106570253
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47825548 ~ 47831937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1780212
CATGTTAATTTTTATTGATTTGTGTTGTTTTAATCAATAATCCTAGACAGGCTTCTTGTAAAACATCTTGGCTTGCTGTTCGTTCATCAATGCATTTTTACAATAGATGCTCATCTATcttaaactataaactataatgATTACTGCATGACCACTGCAAGGTTAACCATGATGGACCACAAATACCTTACAGTCTCTGGCAATACATTGAATACAAGCAAACATACATCTTTTTTAAAATTAATGTTACAGAAATGTTCCAATATTTTATCGTTTGTAAAGGAGTTCCATATCAATTTATATTAATTCATGAAAAAATGATCTAACTGCAATATCCAAAGCACGGCAGAAGAGTGATAGAAAGAATATAGGAAACACTTTGTTTGGATGAGATAGTCAATCTGTAGGCTAAAGACAAGCTGTTGAAATGCTGCTGATTGCCTATTGATAGTTTGTTGAGCATCTGTAGATGAACTCttatataaagtgttaccaaaatatAAGTATAAAAAACAGGAACGACAGATTGTGAACAAAGAAGATAGGAGATTCAACACAAAGAGTGATTCACATAAAGAGAGTACGGAAAGGTACAATGCTGCAGCTATTGACAGCGGGTTTCGAGAAAAATTATGCAGGAGTTAGCCTTAATCTAAATAACATCCATTATTCTATAGCAGACACTCAGAGGCAAGAAGGCTATTAGCAACTGTTCCTGTTGATGTGGCCATTTTCTAATTTGTGACATTAGCACTTTTTTTCCAGTGTGATGTACTGTTACCTTCATGGTCCCACTGTGTATTAAAGGGTGTTAAAACCATACTTAGATGGCCATTATATTGCCATGTACAGTTCATTTACGGAAGGTGTGAACATTGTTACAGGGTAGAAAAGTACTTAAATATCTCTACCCGGTAGATTTGTGCTTGTTTGCAAAGCTAATGCATGTCATTATGTCAATATCATATCTGTAATACATAAGGATGTGTAGGCTGTTCACATTTTAATACACTATCTTCCTTTGTTGCTACCACGTAAATACATGACTTTAGAAATCACATATAAGGTGGGTCTCAGGAATACTGACAAAAGCGATGAGAACATAAACCAGAAATTGATTCAGCTGTAAATAATTCAGTAGTCTGTGTTCTTAGTGCAGAAGCATTTTTACTCACTGCCATGAAATATACTGCAAATAAGACTAGGTATAAAATAGTCTCAGTCTATAATTACATTTTTACAATTTAAGTCGGACTGAATCAGTtcctttcttatttttttttttagcatttaGGGCTAGCCTCAGCAGTAGACTATGTGATCAATTATCACTATGAAAATATCATAAAGTTATCATAAAGAAAGCATACAGAATCACATACACCAGTTGTTTCACCTATAACTGAAAAAGTCAGCGAACtttgacctcagaacagcctcaatttgtctctacaaggtgtcaaaagtgttccactgggatgctggcacaatttgactccaatgcttcccacagttgtcacgttggctggatgtcctttgagtggtggaacattcttgatgcacacgggaaactgttgagcgtgaaaaactcagcagcgttgcagtacttgacatactcaaaccggtgcgcctggcacctaccataccttgttcaaaggcacttaaatcttttgtcttgcccattcactttctgaatggcacacatacacaatccatgtctcaattgtctcaaggcttaaaatccttctttaacctgtctcctccccttcatttacactgattgaagtggatttaacaagtgacaacaataagggatcatagcattcacctgggcagtctatgtcatggaaagagcaggcgttcttaatgttttgtatactacAAAGTCATGTTAAGTGATTTTAGTTTTGAACTGACTTTTGTTTTGGCAGCTGTTGTATCCTTCTGACTTCAGTATGTCCACAGACATACAGATACACATCATTAGAAATATCTAACCATAGTAGTTACATGTAATCTACAGAtggaggatcttaatttgagccagttggctacaacaggaaaataatcatgCAGCAATAGGAAAGGGAAATGATTATGTGGCTTATAATTTATGGTAATTCTTGTAAGAGGTGATACATTTTTCTTAAGTTAAGTTTGACATTTCAAAtaggaaattacaaacttcggGAAGCCTTTTTCAAAACTCAAATACTGTACAAGTTTCCATTTCCTACTGTGCAGGAAAATTCACAGCagcaattaagatcctacacctgtaagAATGAAGTCGACATAATCAGtaattatattatatttgatTTCTTAGTCTGTGCTACCTAGTATCATTTGGCTAAATGATTCACAAAACTTTCGTCATCATTTTGGAGTTTGTCACAGTGGTTTGTGACATAGCATCATGTCCAAGGTCATTCAAAACTATAACTGCGTCTGAAATGGTACCCTAATCCCTGCATAGTGCACCACTTGGTCAaatctagtgcactatatagggaataaggtgccatgtGGGGTGCAATCTATGGCAGGATTTACAGGCTGGATATTTCATCAGCATTGATTTTTTGCAAGGTTACCGGGAGAATGTATACCCTATAATAAACTCAAATTATAGCCTATGAAATACGAAGGTTGATTTTCAACTTAATGGCTATCATCGATTGATGCCCTCAAAGTATAATTGAGCGCTACGATAATCTATTTTAGGAATCTTATCATGACTTAATGCCATAGTTAAGTCTCTCTAATCTGCCATAGATTTATTTAGACAGATGACACAATGTTTCTCTCCAACTGCACAGTTTCATAGAGCCTGCGTGCCACAtttctccctattccctatagtgcactacattcttataaaaaaaaggttccaaaagggttctttggctgtccaaaaaacgtagaacccttttgggttccatatgTAGAACCCTCTATGGAAAGGGTTCGACGTGGTACCGAAAATGGTTATTTAAAGGGTTCTActttggggacagccaaagaacccttcgTAGGTTTTAGATATCAcctttttttcctaagagtgtacttttgaccagagcagaATGGACCTACTGtgtgttcaaaagtagtgcactatatagagaataggatgcctTTTCAATGCATCCTTATTTAAACATAGTTTAATCTGCTATAGATTTTATTTGACAGAtgacacaatgtttttctccAATTACACAGTGACACAGATAGTGAGTCCTATTCAAATCTCACTTGGTTCAGCTATATAAATGCTCAGTGATTCTCAAGAGGTTTGTGGTTTCGGTTTCACAAGCCGCCATACTCTTCCAGTTTAAAGTTGTTGTGCTGTACACAGTGAGTGTTCTGCAGTTGTTGTTCAATTTTCACATTCATCAGAGTAGTAATGCATTCACAAAGAGTGTAGATCATGATTGGACTATGCAGCCCCAGCGTCTTCCGTCTGCTCCTCCAACCTCAATCAGTGGTCTATAACTATTTAGTTATTCCTCTCAGTggtcccttccatctctctgctcctctctgctccaacCGATAAAACCTACCCGTGAAAGTAGGATTGGAGCCGACAGCCAAGGTGTCGTTGGAAAGGAAATGCAATGGTACAGTAGATTGAACCCTCCTGGATTCTCAGCTACAGGGCACAAGCAGGTACAGAGCTCTGTGGTAGATTTTAATGTAGAAATGTTCCATGTTgcaaatgtcaaaaatataaaatattcaaTTCATATCAGGAGTGTTGTAATATTATCTCACTTTGACAACAACGGCGGTGTCGGAGCGTATTGTCAATCAGTAGGGAATTCTCTACGCAATGTTATtatttacagtatatagtataaAAAAATTATGTTGGCTACAGAATCACATAGCTATCAGCCCCATTTTCCCATTTTGATTCTGTGTCTCGTGCCCAGTGCTTTGCACTAAAGTATGCTTTCTTCTTCTACATGTGAAATGTCACtgtttttccttttgttttgaaGTAGATGAGAAAGTGGAAAATAATGTTCTGTTTTTCCCATGAGATCTTAATTTGACTCCATGGAAGTAGAGTTAAGTGTGATGCTTAGAATATGCCTCAGCAATCTTTAAAGTTCCTCATCAATGTAAGTTTACAGGTGCTTGCTTCCCAGGGAATAGAAAGAAGATCAACCAAggcaatgcattcggaaagtattcagaccccttgacttttccacattttgttaaagcctttttctaaaatgtgtaaaaatatttttttggtcctcatcaatctacacacaataccctataatgacaaagtgaaaacaggttttttgatatttttgcaaatgtattaaaattaaaaaacagaaaaacattatttacttaagtattcagaccctttgtacTCAGACCCTTTCCagtgatcatcattgagatgtttttacaactttattggagtccacttgtggtaaattcagttgattggacatgatttggaaaggaacacacctgtctgtaaggtgacacagttgacagtgcatgtcagagagtccaagccatgaggtcaaaggaattgtccgtagagctccgagacaggattgtgttgaggcaaagatctggggaagggtaccaacatttttttgcagcattggaggtccccaagaacagagtgacctccatcattcttaaatggaatatgtTTGGAATAATCAAGACTATTCTTAGAGCTGGCTGGCCGCCCGGCCGAACTgaacaattgggggagaagggccttggtcagggaggtcaacaagaacccgatggtcactctggcagaggtCCAGACATcctcagtggagatgggagaaccttccagaaggacaaccatctctgtagcactccaccaatcaggcctttatggtagagtggccagacggaagccactcctgagtaaaaggcacatgacagccagctttgAGTTttcaaaagacacctaaagaactctcagaccgtgagaaacaagattctctggtctgatgaaaccaaaattgaactctttggcctgaatgccaagcgtcacgtctcgaggaaacctggcaacatccctacggtgaaatatggtggtggcagcatcatgctgtcgggatgtttttcagcagcagggactgggagactagtcaggatcaagggaaagatcaacagagcaaagtatagagatatccttgatgaaatcctgctcaaGAGGGCTCAGAACCTGACTGcggtgaagattcaccttccatcaggacgACTCTAACcacagagccaagacaacgcaggactggttttgggacaagtctctgtatgtccttgagtggcccagccagagtccagacttaaacccgatcaaacatctctggagagacttgaaaataactgtgcagtgacgctccccatccaacctaacagagcttgagaggatctgcagagaagaaggggagaaacaccccaaatgcagatgtgccaagcttgtagcgtaatacccaagaagacttgaggctgtaattgaatacattttggaataaggcagtaacgtaacaaaatgtagaaaagggtctgaatagttgtAGAATGCACTGTGTCTACTCATTTGGTGGTTTCCCTTACCCTGTTGCCTATATTTAAAAACATCCCCAGTCCCATATTTTTGCAGCTTGTCATCAGTCACAAACAAGGATGACTAAATGATGAAACCAAGTGGCATTCTTTGGACCACTGTCCTTGACAACATCCTGTGTATTCTCTCTGCAGCCAGACATCCATTTGTCACAAACCAGAAATGCGCTACTCAAAAGCTCTGGCACCGTCACAGATTGTCTCTGGATAGCGGAAAACGATTTATGGTGAAACATTGAATCTGTCTTCTTCTGAGCAACAATAAAGAAGATTCCTAAATCTCACTGGGAGGAATATCAATTATGtggtcaaaaaaataaaaaaaatggtgtgGTTTGGACCCCTCTTTACTGACAACTCTGTGAGTCTCACTAAATCAATGCTTATCCTGTCAGAACTCTGTTGTGGAGATCTGGGTGACCTCAGACTGCAAGTCTTGCTGGGCCCTCCTGGATTGAGAACCAGAACCACAAGGGATCTGGTCCATGCCTAGTCATACAGGCTTCCTTTCCTTCCCAGCTACAGTCGGAGTGCAGACTGACACGGGCTCCCTGTTGGCGTTCCGACCCCTGTTGAGGGAGTTGCGTTCCACGCGGgtccggcagggcaggcagaaGTCCCGGAAGCACCTCTTGAAGTTCTCGTCCAGGAAAGCGTAGAGAACAGGGTTGAGACTACTGTTCATGTAGCCCAGCGCAATGCAGAGGTGCCAACTGGCTTT

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1780212 True 6352 lncRNA 0.40 2 47825548 47831937

Neighbor

gene id symbol gene type direction distance location
LOC110496399 NA coding downstream 17187 47807079 ~ 47808361 (-)
LOC110496398 LOC106588638 coding downstream 178137 47636521 ~ 47647411 (-)
LOC110496393 LOC106588612 coding downstream 497189 47326949 ~ 47328359 (-)
LOC118941176 NA coding downstream 533340 47258150 ~ 47292208 (-)
LOC118941174 NA coding downstream 574581 47248660 ~ 47250967 (-)
LOC110496837 LOC106588626 coding upstream 58643 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 coding upstream 150789 47982726 ~ 47986560 (-)
LOC110496402 LOC106588641 coding upstream 169949 48001886 ~ 48022110 (-)
LOC110496403 LOC106570256 coding upstream 205921 48037858 ~ 48049720 (-)
LOC118941177 LOC106588644 coding upstream 225085 48057022 ~ 48062162 (-)
G1555928 NA non-coding downstream 38479 47786857 ~ 47787069 (-)
G1555925 NA non-coding downstream 42774 47782527 ~ 47782774 (-)
G1555922 NA non-coding downstream 48530 47776722 ~ 47777018 (-)
G1555915 NA non-coding downstream 62343 47762965 ~ 47763205 (-)
G1555914 NA non-coding downstream 62649 47762568 ~ 47762899 (-)
G1555985 NA non-coding upstream 32283 47864220 ~ 47864577 (-)
G1556272 NA non-coding upstream 45680 47877617 ~ 47877999 (-)
G1556275 NA non-coding upstream 50562 47882499 ~ 47882735 (-)
G1556276 NA non-coding upstream 50941 47882878 ~ 47883173 (-)
G1556277 NA non-coding upstream 52137 47884074 ~ 47884438 (-)
G1555543 NA other downstream 278977 47543208 ~ 47546614 (-)
G1555168 NA other downstream 912633 46911977 ~ 46912915 (-)
G1554091 NA other downstream 1717446 46101248 ~ 46108102 (-)
G1553693 LOC106588587 other downstream 2022500 45788099 ~ 45803048 (-)
G1553544 NA other downstream 2157808 45667361 ~ 45667740 (-)
G1556577 NA other upstream 524676 48356613 ~ 48356847 (-)
G1558535 NA other upstream 2135959 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 2191154 50023087 ~ 50034167 (-)

Expression


Co-expression Network