G1556006 (LOC106588626)


Basic Information

Item Value
gene id G1556006
gene name LOC106588626
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47902855 ~ 47903371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1780262
CAAGACGAGAGGACGGGAGAAAAGGCCAAGTTACTGTATAGAACAACACCCTGTGTTTCAGTATGCATCGAGTCTAACCATGACACTGAAAAAGACACTTAGGTTGAAAAAGGTCAGGGTTAACTCACCAAGCAGAGCAGGGTTGCTGTTGCGGTTGGCGGGTTTGGGTGGGGGGACAGGTGGCTGCTTGGCATGGGGGGGTACGGGGGGAGGAGTGGCCGATTCCCctgtggtggaggaggggggtaCCTGGCTGGAACGTACAGGGGGGACAGGGTTGGAGTGGGTGGGAGGAGGGTCATCACTGATGATCAGGGAGACAGTCCTGGCGGGCTTGGCCACAGCTACagcaggggaggtagaggaggagggtggggtggaggTCCGGACAGGCTCCGTGGAGGTGGTGATAGTGAGGTGGCTCTTAGGAGGGAGCATGGCCTGTTTGGTAGGAGGCGGCTCTCTACGGGAGGAGTCAGGATCTGGGGTGTGGACAGGGGCGAAGCGGACACCAGTG
>TU1780263
GCTGCTTGGCATGGGGGGGTACGGGGGGAGGAGTGGCCGATTCCCctgtggtggaggaggggggtaCCTGGCTGGAACGTACAGGGGGGACAGGGTTGGAGTGGGTGGGAGGAGGGTCATCACTGATGATCAGGGAGACAGTCCTGGCGGGCTTGGCCACAGCTACagcaggggaggtagaggaggagggtggggtggaggTCCGGACAGGCTCCGTGGAGGTGGTGATAGTGAGGTGGCTCTTAGGAGGGAGCATGGCCTGTTTGGTAGGAGGCGGCTCTCTACGGGAGGAGTCAGGATCTGGGGTGTGGACAGGGGCGAAGCGGACACCAGTG

Function

NR:

description
phosphatase and actin regulator 4A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1780262 False 517 TUCP 0.60 1 47902855 47903371
TU1780263 True 335 TUCP 0.65 1 47903037 47903371
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496400 LOC106588639 coding upstream 76050 47800813 ~ 47826805 (+)
LOC110496397 LOC106588637 coding upstream 357509 47533777 ~ 47545346 (+)
LOC110496396 LOC106588636 coding upstream 369482 47523790 ~ 47533373 (+)
LOC110496395 LOC106588635 coding upstream 385169 47405537 ~ 47517686 (+)
LOC110496394 LOC106588610 coding upstream 536362 47361958 ~ 47366493 (+)
LOC110496404 LOC106588645 coding downstream 170522 48073893 ~ 48109017 (+)
LOC110496405 LOC106588646 coding downstream 228939 48132310 ~ 48140645 (+)
LOC110496406 LOC106588634 coding downstream 898173 48801544 ~ 48802991 (+)
LOC110496411 NA coding downstream 932296 48835667 ~ 48838643 (+)
LOC118941233 NA coding downstream 933113 48836484 ~ 48836619 (+)
G1556008 NA non-coding upstream 131 47902124 ~ 47902724 (+)
G1556000 NA non-coding upstream 13404 47889246 ~ 47889451 (+)
G1555984 NA non-coding upstream 39026 47863611 ~ 47863829 (+)
G1555845 NA non-coding upstream 84719 47817483 ~ 47818136 (+)
G1555824 NA non-coding upstream 114694 47787856 ~ 47788161 (+)
G1556014 NA non-coding downstream 8130 47911501 ~ 47911746 (+)
G1556040 NA non-coding downstream 43024 47946395 ~ 47946933 (+)
G1556043 NA non-coding downstream 46007 47949378 ~ 47949631 (+)
G1556067 NA non-coding downstream 79425 47982796 ~ 47983482 (+)
G1556071 NA non-coding downstream 86620 47989991 ~ 47990217 (+)
G1556007 NA other upstream 1227 47900469 ~ 47901628 (+)
G1555433 NA other upstream 374816 47527745 ~ 47528039 (+)
G1555420 NA other upstream 417663 47483356 ~ 47485192 (+)
LOC110496389 LOC106588614 other upstream 700819 47200301 ~ 47202906 (+)
G1554912 NA other upstream 985895 46911533 ~ 46916960 (+)
G1556003 LOC106588626 other downstream 478 47903849 ~ 47905387 (+)
G1556127 NA other downstream 171265 48074636 ~ 48112652 (+)
G1557717 NA other downstream 1642178 49545549 ~ 49545809 (+)
G1557814 NA other downstream 1857057 49760428 ~ 49760966 (+)
G1558443 NA other downstream 2316383 50219754 ~ 50220127 (+)

Expression

G1556006(LOC106588626) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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G1556006(LOC106588626) Expression in each Bioproject

Bar chart with 15 bars.
G1556006(LOC106588626) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Co-expression Network