G1557166


Basic Information

Item Value
gene id G1557166
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 48688255 ~ 48689122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1781493
GCTTCAATGtagtgctcttattcttctcactttgcttggtgagacAGAGTGCTGTTATAACTTGATGAAcattcacatacctaaccatttccttggctctcttgtagattGTATCCATTATTTTCAGTGCCATGTTGTCcctgaggagcagattcaatgcatgagcagcacagccaatgggtgtgatgtgagggtaggactcctccactttagaccaagcagccttcatgttcacagcattgtctgtcaccagtgcaaataccttctgtggtccaaggtcattgccttcagctcatctgcaatgtagagaccggtgtgtctgttgtcccttgtgtctgtgctcttgtagaatactggttgaggggtggagatgatgtagttaattattccttgcccacgaacattcgaccacccatcagagatgattgcaatacagtctgctttctctatgatttgcttgaccttcacttgaactctgtcgAACTCTgaatccagcaaatgagtagataaagcatgtctggttggaggggtgtatgctgggcgaagaacattcagaaatctctcccaatacacattgcctgtgaggaGGTGAActagttgcatacacagcttgagcaagacattcatcagcatttctctgactacgttcctccattgagtcaaaaaaatcttctgattccaggaggaccatgagctgttgctatcgataaggtgtctgattcatcatttttaCCTCAAATAGAAGTaaagggacttttgtcagaggttgcttgttgtgagtgtTGAGGGAACTTtgtgcacttggccagatgattctgcatctttgttgcattcttcatatatgatttggcacagtatttgcgaatgt

Function

NR:

description
uncharacterized protein LOC106675542

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1781493 True 868 lncRNA 0.44 1 48688255 48689122

Neighbor

gene id symbol gene type direction distance location
LOC110496838 LOC106570261 coding downstream 26908 48391915 ~ 48661347 (-)
LOC118941177 LOC106588644 coding downstream 626093 48057022 ~ 48062162 (-)
LOC110496403 LOC106570256 coding downstream 638535 48037858 ~ 48049720 (-)
LOC110496402 LOC106588641 coding downstream 666145 48001886 ~ 48022110 (-)
LOC110496401 LOC106588640 coding downstream 701695 47982726 ~ 47986560 (-)
LOC110496839 LOC106588648 coding upstream 40103 48729225 ~ 48730477 (-)
LOC118941178 NA coding upstream 65408 48754530 ~ 48755869 (-)
LOC110496407 LOC106588649 coding upstream 129815 48818937 ~ 48828082 (-)
LOC118941242 NA coding upstream 138847 48827969 ~ 48828104 (-)
LOC110496408 rb39b coding upstream 140066 48829188 ~ 48834648 (-)
G1557165 NA non-coding downstream 352 48687496 ~ 48687903 (-)
G1557132 NA non-coding downstream 42475 48642425 ~ 48645780 (-)
G1557116 NA non-coding downstream 49323 48617333 ~ 48638932 (-)
G1557006 NA non-coding downstream 245634 48440212 ~ 48442621 (-)
G1556611 NA non-coding downstream 308752 48379279 ~ 48379503 (-)
G1557175 NA non-coding upstream 7373 48696495 ~ 48696715 (-)
G1557178 NA non-coding upstream 9238 48698360 ~ 48698613 (-)
G1557184 NA non-coding upstream 16668 48705790 ~ 48706011 (-)
G1557188 NA non-coding upstream 26441 48715563 ~ 48715767 (-)
G1557202 NA non-coding upstream 45435 48734557 ~ 48734788 (-)
G1556577 NA other downstream 331408 48356613 ~ 48356847 (-)
LOC110496837 LOC106588626 other downstream 742681 47890580 ~ 47945574 (-)
G1555543 NA other downstream 1141684 47543208 ~ 47546614 (-)
G1555168 NA other downstream 1775340 46911977 ~ 46912915 (-)
G1558535 NA other upstream 1278774 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 1333969 50023087 ~ 50034167 (-)
LOC110496438 LOC106588686 other upstream 1667147 50256021 ~ 50359132 (-)
G1558916 NA other upstream 1747875 50436997 ~ 50437459 (-)
G1559205 NA other upstream 1933969 50623091 ~ 50623983 (-)

Expression


Co-expression Network