Gene
RNA
| Item | Value |
|---|---|
| gene id | G1558134 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 49580974 ~ 49581482 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: retinoic acid receptor beta-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1782606 | True | 509 | lncRNA | 0.64 | 1 | 49580974 | 49581482 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100135978 | LOC106588669 | coding | downstream | 107845 | 49332681 ~ 49473129 (-) |
| LOC118940996 | NA | coding | downstream | 183507 | 49380856 ~ 49397467 (-) |
| LOC110496424 | LOC106588667 | coding | downstream | 283631 | 49295572 ~ 49297343 (-) |
| LOC110496421 | LOC106588664 | coding | downstream | 371491 | 49203985 ~ 49209483 (-) |
| LOC110496422 | LOC106588665 | coding | downstream | 377086 | 49201226 ~ 49203888 (-) |
| LOC110496426 | LOC106588671 | coding | upstream | 185658 | 49767140 ~ 49796975 (-) |
| LOC110496431 | LOC106588678 | coding | upstream | 391972 | 49973454 ~ 49982570 (-) |
| LOC110496434 | LOC106588680 | coding | upstream | 441605 | 50023087 ~ 50034167 (-) |
| LOC110496842 | LOC106588681 | coding | upstream | 523800 | 50105282 ~ 50143368 (-) |
| rfa3 | rfa3 | coding | upstream | 566822 | 50148304 ~ 50149605 (-) |
| G1558118 | LOC106582599 | non-coding | downstream | 36390 | 49544313 ~ 49544584 (-) |
| G1558076 | NA | non-coding | downstream | 103405 | 49477352 ~ 49477569 (-) |
| G1557993 | NA | non-coding | downstream | 261447 | 49262657 ~ 49319527 (-) |
| LOC110496415 | LOC106588660 | non-coding | downstream | 443003 | 49134674 ~ 49146147 (-) |
| G1557879 | NA | non-coding | downstream | 494953 | 49084672 ~ 49086021 (-) |
| G1558139 | NA | non-coding | upstream | 4861 | 49586343 ~ 49586880 (-) |
| G1558152 | NA | non-coding | upstream | 29204 | 49610686 ~ 49611260 (-) |
| G1558156 | NA | non-coding | upstream | 38907 | 49620389 ~ 49620588 (-) |
| G1558196 | NA | non-coding | upstream | 109132 | 49690614 ~ 49704345 (-) |
| G1558215 | NA | non-coding | upstream | 164797 | 49746279 ~ 49753092 (-) |
| G1556577 | NA | other | downstream | 1224127 | 48356613 ~ 48356847 (-) |
| LOC110496401 | LOC106588640 | other | downstream | 1597365 | 47982726 ~ 47986560 (-) |
| LOC110496837 | LOC106588626 | other | downstream | 1635400 | 47890580 ~ 47945574 (-) |
| G1555543 | NA | other | downstream | 2034403 | 47543208 ~ 47546614 (-) |
| G1555168 | NA | other | downstream | 2668059 | 46911977 ~ 46912915 (-) |
| G1558535 | NA | other | upstream | 386414 | 49967896 ~ 49968608 (-) |
| LOC110496438 | LOC106588686 | other | upstream | 774787 | 50256021 ~ 50359132 (-) |
| G1558916 | NA | other | upstream | 855515 | 50436997 ~ 50437459 (-) |
| G1559205 | NA | other | upstream | 1041609 | 50623091 ~ 50623983 (-) |
