G1558460


Basic Information

Item Value
gene id G1558460
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49921197 ~ 49922691 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1783002
aaaaataaaaaataaaaaataaagagatGCATTACATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG
>TU1783004
CATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG
>TU1783006
CATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG
>TU1783007
CATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG
>TU1783008
CATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG
>TU1783009
CATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG
>TU1783010
aaaaataaaaaataaaaaataaagagatGCATTACATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG
>TU1783011
aaaaataaaaaataaaaaataaagagatGCATTACATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1783002 False 1143 lncRNA 0.40 2 49921197 49922691
TU1783004 False 1109 lncRNA 0.41 2 49921197 49922657
TU1783006 False 1241 lncRNA 0.41 3 49921197 49922657
TU1783007 False 1241 lncRNA 0.41 2 49921197 49922657
TU1783008 False 1241 lncRNA 0.41 3 49921197 49922657
TU1783009 False 1241 lncRNA 0.41 3 49921197 49922657
TU1783010 False 1231 lncRNA 0.41 2 49921197 49922691
TU1783011 True 1275 lncRNA 0.41 3 49921197 49922691

Neighbor

gene id symbol gene type direction distance location
LOC110496426 LOC106588671 coding downstream 124222 49767140 ~ 49796975 (-)
LOC100135978 LOC106588669 coding downstream 448068 49332681 ~ 49473129 (-)
LOC118940996 NA coding downstream 523730 49380856 ~ 49397467 (-)
LOC110496424 LOC106588667 coding downstream 623854 49295572 ~ 49297343 (-)
LOC110496421 LOC106588664 coding downstream 711714 49203985 ~ 49209483 (-)
LOC110496431 LOC106588678 coding upstream 50763 49973454 ~ 49982570 (-)
LOC110496434 LOC106588680 coding upstream 100396 50023087 ~ 50034167 (-)
LOC110496842 LOC106588681 coding upstream 182591 50105282 ~ 50143368 (-)
rfa3 rfa3 coding upstream 225613 50148304 ~ 50149605 (-)
LOC118941183 NA coding upstream 229332 50152023 ~ 50197214 (-)
G1558459 NA non-coding downstream 36727 49876508 ~ 49884470 (-)
G1558254 NA non-coding downstream 73771 49847163 ~ 49847426 (-)
G1558215 NA non-coding downstream 168105 49746279 ~ 49753092 (-)
G1558196 NA non-coding downstream 216852 49690614 ~ 49704345 (-)
G1558156 NA non-coding downstream 300609 49620389 ~ 49620588 (-)
G1558551 NA non-coding upstream 69418 49992109 ~ 50001982 (-)
G1558557 NA non-coding upstream 83653 50006344 ~ 50006578 (-)
G1558639 NA non-coding upstream 228207 50150898 ~ 50151114 (-)
G1558649 NA non-coding upstream 235108 50157799 ~ 50158258 (-)
G1558641 LOC106588684 non-coding upstream 236996 50159687 ~ 50164221 (-)
G1556577 NA other downstream 1564350 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 1937588 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 1975623 47890580 ~ 47945574 (-)
G1555543 NA other downstream 2374626 47543208 ~ 47546614 (-)
G1555168 NA other downstream 3008282 46911977 ~ 46912915 (-)
G1558535 NA other upstream 45205 49967896 ~ 49968608 (-)
LOC110496438 LOC106588686 other upstream 433578 50256021 ~ 50359132 (-)
G1558916 NA other upstream 514306 50436997 ~ 50437459 (-)
G1559205 NA other upstream 700400 50623091 ~ 50623983 (-)

Expression


Co-expression Network