G1558641 (LOC106588684)


Basic Information

Item Value
gene id G1558641
gene name LOC106588684
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50159687 ~ 50164221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1783209
GCTTTTGTACAAATTTGATCAAGTTCTTTCACCCACATTCAAACATAAGATTATGTATAGCTGATTCACAAATGAAATGCATATACAATTAAAACACAAGATACAAGATACAGAACCAAAATAAAAGGCATTGGACAAGGACTGAAAAGGAAGTAAAGCTGAAGACAGGGTTCAGAATAAGGGGGTGTAAACTTGGCAGATTTACCACAAGGTAAAATAGTTTGCTTTTTAAAGTGGCATTCAAACTTCTTCAGAGGTAGGCACATTTTCAAAGAACGCACAACTGCATGTTCAGAGGTTAACCAGATGTATTATTGCATGTAACATCCTCCATAACTCTTAATATCAATTTGAAGTTACAGTACTTGCAGTGTTGGAAAGTAGTGAAGTACTGTACATGTAGTTCAACTGGTGATTTAACAACATTTTTGCactagcttggtggtagttgaactacaTTGAAATCATTTACTGGTGtggctaactactggaactacattCTACTACtattttccaaaaataaaatatGGGTGAAATAGGCAATCATCTTTCTTTTTCAGCATCGGACTGCCTAAATTCTCACTTGAATTTTGTTGTTGTGATTAATTGGATAAATTTCATATTAGTTTAACATCTGACTACAGCGTGATCTGTTCaaagtagcttccccaacacggAGTACATAATATCAGGATAACGTGCAAACACTTGGCTGATGGTCAGGTATGAAAACAGAAGCAGGTAAGTAGGGCAGATAGGATGTAAAACATATCCTCTAACCCAATATGACAtatagtgcattctgaaagtattcagCTACTACTAATAAAAACACAGTACTCACGATTTTACAGGTCAACCATCTTTAGAGAAACCCCCTCAGTTAAAAATGACAAGATAAATGAAAACAATGTATTGTTAATAGCAAACATGCACAACAACCACAAATTAACCACACCGTAACTAAACCCCCAAAACACATCCAAGTAAACCAAATAAATTAAGTTACTCAAACTCAAATCCCCCCCCAAAATACAAAGCAAACAACTGTAGCCTTCCACGCCGGtgaataaaaaataatttaaaaatgcTATGTTATAGGTCAGTGATTGAATTacaaagagaggaagaggccTGGGGAAATCCACAGTATTGTTTAACACAGACAGATATAAATACCCTTGGTTTCCAGGTATGCACAGCAAAGGATTGTCCAGACAGGGTAAATCCCAAATATTTCATAATGTATGCAGTAGTAAGGCTGCGATTACACATgcagcccaattcagattttCTTTcacaattattggcaaaagaacTGATCAAAGAAAGAATCATTTGGCTGTGTGTGTAAATGCAGCCTCTATGGATGATTTCACATGATGTGGAATACCACAACATGGCACTGAAAATAACAGCAACTTATGAGTCATCTTTTCGGGTTCTTGAGTGGTTGTCTTAGGAGTTAACCCATAGGGAGTTTCCTTCAAATAATAGTCCTAAAAAGTATTTTAACTATATATAATTGGTATTTTCTTGCCCCCTCACATTTGTACAGCAGTCAGAGGTAACTGAACATATGTGTGTTCACAAGATCATTTGTTCGCCAGTGTGCAATGAATGCAGTATATGTGACAGGATACATTGAAACACTGTCAAATCTAAACTGTGCCATGAAGACTGGGGGAAACTTGGTTGGTTCAgaataaataacaataaatacAACGTTTGGGAAAGTTACAACACATGATGCGTTCATTAGAGCCATGCTGATGATGATCAAGAGAGAAAGGCCACATAAGAGTCACCATATCGAGTGAGTCCTGATAATACATGTTGAAAAATAGGGGATATATATTCTTACAGGTTAAAATAGATCAGAAAGCTACATAGTTCCTCTATAGAAATGCTTATGCTACACAAAcacttttttcaaatgttttgttAAAGCGTTCTTAACTTCATGGGCAAAAGTGAGGACAGCAGAGAGAAAACATCGTAACCAAATAAAGAATACGTGTAATTTCCTTTCTAAGATTTGAAAACTATCTGAAATCTGTCTCATGCGTACATTAGTGCAAACCCAAAGGTCAATCAGTGACTTCTAAACTAACAGCAACAACAGGTGAATCTACAGACCCAGACACTGTTCAAATGAAACACAAAGCTATGATGAAGCATGCCAGTCAGACATGAAGCTAGCGCTCTTCTGATACACACCGTTCTTAAAACAGTGAACCAGCACTACTATGACAGGCGCATCAGAAAGTGATTCACCTTGAACTAGTAGTCTACAATCTTAATGGTGGAACTCTGCGAACCCATCTACCTACATACTGTGTGTAACCTACATCACTGCCGGCAGGTGCAGTTTTGACCCCAACTGACTCACACCTGTTTTCTAACTCTGATCATCACAATAACCAGGTTTCCCATTAATTATAGTACTACCATTCTCAGACTGAAACTAAACCTGATTGGTAACGAGCCAAGACAGTCCAAggtagtgttcagtagggcaAACGTAGCTAAACACTTTGGAAAACAAACATGTGACTTTCTTATTGGACAGGCACAGGTAGTCCCGTCTTGTTTCAGTACGTTTTCATCTGTTTGCTGCccaatgaacacgacccagggtTGACGTAGGGCTGGTATTGGAGGGGAGGTTGACAGATCAAAAGGTCAGCGGTCATAGTCAGCAAGTCAATCTACAGGTCAATGGTCACAGAGCACAGAGTTCTCCAGGGTGAAGTCATAGGTGAAGGAGGCCAGGTTGTGGTTGATGTCTTGGGGCGACATCAGCATCTCAGAGAAGAGGGGGAACCCAGGACCCCCTGTCTGCATGGCCAAAACATGGGGGGCCAGGGTGAATGGGACATCTCCTAGTAGCTCTGGGAGAGACAGTGCTGCCTCCACTATGGGTGCGGGGGGCTTCCACATAGGTCCTGGTGATGGGGCGATCACTGAAGGTGGAGCAGGGGCTGGAGAGTGGTGGGCCTGGGTAGGTGTGGTACT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1783209 True 3018 lncRNA 0.40 2 50159687 50164221

Neighbor

gene id symbol gene type direction distance location
rfa3 rfa3 coding downstream 10082 50148304 ~ 50149605 (-)
LOC110496842 LOC106588681 coding downstream 16319 50105282 ~ 50143368 (-)
LOC110496434 LOC106588680 coding downstream 125520 50023087 ~ 50034167 (-)
LOC110496431 LOC106588678 coding downstream 177117 49973454 ~ 49982570 (-)
LOC110496426 LOC106588671 coding downstream 362712 49767140 ~ 49796975 (-)
LOC110496438 LOC106588686 coding upstream 91800 50256021 ~ 50359132 (-)
LOC110496443 LOC106588718 coding upstream 379158 50543379 ~ 50592411 (-)
thsd7aa LOC106588717 coding upstream 435734 50599944 ~ 50755992 (-)
LOC110496448 LOC106588712 coding upstream 833302 50997523 ~ 51012139 (-)
LOC110496450 LOC106588689 coding upstream 882181 51046402 ~ 51049503 (-)
G1558649 NA non-coding downstream 1429 50157799 ~ 50158258 (-)
G1558639 NA non-coding downstream 8573 50150898 ~ 50151114 (-)
G1558557 NA non-coding downstream 153109 50006344 ~ 50006578 (-)
G1558551 NA non-coding downstream 157705 49992109 ~ 50001982 (-)
G1558460 NA non-coding downstream 236996 49921197 ~ 49922691 (-)
G1558698 NA non-coding upstream 80720 50244941 ~ 50245230 (-)
G1558699 NA non-coding upstream 81333 50245554 ~ 50245787 (-)
G1558700 NA non-coding upstream 81640 50245861 ~ 50246108 (-)
G1558701 NA non-coding upstream 82031 50246252 ~ 50246627 (-)
G1558705 NA non-coding upstream 87010 50251231 ~ 50251456 (-)
G1558535 NA other downstream 191079 49967896 ~ 49968608 (-)
G1556577 NA other downstream 1802840 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 2176078 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 2214113 47890580 ~ 47945574 (-)
G1558916 NA other upstream 272776 50436997 ~ 50437459 (-)
G1559205 NA other upstream 458870 50623091 ~ 50623983 (-)
LOC110496463 LOC106588703 other upstream 1048934 51213151 ~ 51214398 (-)

Expression


Co-expression Network