G1558877


Basic Information

Item Value
gene id G1558877
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50398846 ~ 50401375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1783509
gtacaaacaatagaacgcaagtataaacaccatgggaccacgcagccatcatccgaggcgcattctgtctcctagagatgaatgcaaatcaatcccagaacaacagcaaaggaccttgtgaagattctggaggaaaccagtacaaagtatctatatccacagtaaaaggagtcctatattgacatcacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccaccataaaaaaagccagactacgatttgcaactgcacatgagaacaaagattgtactttttggagaaatgtcctctggcctgatgaaacaaaaatataactatttggccataatgaccatcattatgtttggaggaaaaaggggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacgggggtggtagcatcatgttgtggggctgctttgctgcaggagggacgggtgcacttcacaaattggatggcatcatgaggcaggacaattatgtggataatattgatgcaacatctcaagacatcagtcatgaagttcaatcttggtcgcaaatggtcttctaaatggacaatgaccccaagcatacttccacagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatagagcaTTTGTGGGCCGAActaaaagtgtgtgcgagcaaggaggcctacagacatgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagctggtggaaggctacccgaaacgtttgacccaagttaaacaatttaaaggcaatgctactaaatactaattgagtatatgtaaacttccaacttcaactgtacatattacgtcaattacctcaactaaccggtgcccccgcacattgactctgtaccggtaccccctatatatagcctccacattgactctgtatatagcctccacattgactctgtatataacctccatattgactctgtgtatagcctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtatatagcttccacattgactctgtatataacctccatattgactctgtgtatagcctccacattgactctctgtatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtgtataacctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtatataacctccacattgactctgtatataacctccatatttactctgtgtatagcctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatataacctccatattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatataacctccacattgactctgtatataacctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatataacctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtatataacctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtgtatagcctccacactgactctgtgtatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatatagcctccacattgactctgtatataacctccacattgact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1783509 True 2340 lncRNA 0.43 2 50398846 50401375

Neighbor

gene id symbol gene type direction distance location
LOC110496438 LOC106588686 coding downstream 39714 50256021 ~ 50359132 (-)
LOC118941183 NA coding downstream 201632 50152023 ~ 50197214 (-)
rfa3 rfa3 coding downstream 249241 50148304 ~ 50149605 (-)
LOC110496842 LOC106588681 coding downstream 255478 50105282 ~ 50143368 (-)
LOC110496434 LOC106588680 coding downstream 364679 50023087 ~ 50034167 (-)
LOC110496443 LOC106588718 coding upstream 142004 50543379 ~ 50592411 (-)
thsd7aa LOC106588717 coding upstream 198580 50599944 ~ 50755992 (-)
LOC110496448 LOC106588712 coding upstream 596148 50997523 ~ 51012139 (-)
LOC110496450 LOC106588689 coding upstream 645027 51046402 ~ 51049503 (-)
LOC110496449 LOC106588710 coding upstream 651392 51052767 ~ 51067584 (-)
G1558841 NA non-coding downstream 27936 50370641 ~ 50370910 (-)
G1558804 NA non-coding downstream 89798 50306757 ~ 50309048 (-)
G1558784 NA non-coding downstream 132971 50264557 ~ 50265875 (-)
G1558713 NA non-coding downstream 142917 50255547 ~ 50255929 (-)
G1558905 NA non-coding upstream 22610 50423985 ~ 50424198 (-)
G1558917 NA non-coding upstream 36343 50437718 ~ 50438278 (-)
G1558935 NA non-coding upstream 50766 50452141 ~ 50452376 (-)
G1558937 NA non-coding upstream 51679 50453054 ~ 50453283 (-)
G1558940 NA non-coding upstream 53135 50454510 ~ 50454737 (-)
G1558535 NA other downstream 430238 49967896 ~ 49968608 (-)
G1556577 NA other downstream 2041999 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 2415237 47982726 ~ 47986560 (-)
G1558916 NA other upstream 35622 50436997 ~ 50437459 (-)
G1559205 NA other upstream 221716 50623091 ~ 50623983 (-)
LOC110496463 LOC106588703 other upstream 811780 51213151 ~ 51214398 (-)
G1560339 NA other upstream 981297 51381731 ~ 51455285 (-)

Expression


Co-expression Network