G1559041 (thsd7a)


Basic Information

Item Value
gene id G1559041
gene name thsd7a
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50633743 ~ 50635566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1783680
CCAGACCCCCCAGTCAGACAGAACACAGTCCTCAGGGCAGGGCAGCTGGCTATCTCTGGCCCCAAGTGGCATCTCCTCTGGGTCACACAGGTAGTCCTCCACAGAGTCCGACGGCCCATCCATAGTGTTCTGCATACACCTGGACAGAGGGGGACAATAGGCTAGTAGTACTGATTGgccctgtcatgccaaatagtgtcGTTGTTGTTGTCCCCCCCATTCGATCAGGTCTAGCTTCCGTTGCTAGGGCTGTTGCTAGAACTTGCAAAATTCTGACCAGCCTACACTCCATTTggagctgaaatgaatcattcaaATAGGTTAAGTTGTATCTATATGAGCTGTTTGTCCATACCTGACCTTTCTGGTCTGCACTCCTTCTCCACAGTTCTCCTTCAGGTCCACGTTGCTGACCTTCCAGACACTCCAGGGTTCAGCCACCCACACATACTGACCACAGTCACTGAGACACGGCACCACCTCATACACCTTCACCTGGTTGACGTGGTCGAGTTTGGGGCACGGTCTACCACCGTTGTAAGGCTTCTCCCTCAGCCACTTGGAACGCACTTTGACCCCGCTGCCGCAAGACTTGCTGCATCGTGACCAGTTGGACCACTCACTGAGTTTACAGTCAGACGGACAGGGGATGATGCAAGCCTCCTCAATATA

Function

symbol description
thsd7a Predicted to be involved in actin cytoskeleton reorganization. Located in plasma membrane.

NR:

description
PREDICTED: thrombospondin type-1 domain-containing protein 7A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1783680 True 672 TUCP 0.53 2 50633743 50635566

Neighbor

gene id symbol gene type direction distance location
LOC110496437 glci1 coding upstream 425329 50164885 ~ 50208414 (+)
LOC118941182 LOC106588684 coding upstream 471823 50149776 ~ 50164046 (+)
LOC110496436 LOC106588683 coding upstream 528823 50101428 ~ 50104920 (+)
LOC110496433 asns coding upstream 612555 50006928 ~ 50021188 (+)
LOC110496432 LOC106588679 coding upstream 631726 49983160 ~ 50002017 (+)
LOC110496445 LOC106588715 coding downstream 195179 50830745 ~ 50847989 (+)
LOC110496446 LOC106588714 coding downstream 219297 50854863 ~ 50869356 (+)
LOC110496447 arl4a coding downstream 234908 50870474 ~ 50874167 (+)
LOC118941227 NA coding downstream 309847 50945413 ~ 50945469 (+)
LOC118941228 NA coding downstream 316750 50943648 ~ 50952445 (+)
G1559040 NA non-coding upstream 866 50632543 ~ 50632877 (+)
G1559039 NA non-coding upstream 2672 50630624 ~ 50631071 (+)
G1559037 NA non-coding upstream 6728 50626788 ~ 50627015 (+)
G1559036 NA non-coding upstream 7566 50625895 ~ 50626177 (+)
G1559032 NA non-coding upstream 10706 50622261 ~ 50623037 (+)
G1559056 LOC106570313 non-coding downstream 19420 50654986 ~ 50655466 (+)
G1559063 thsd7a non-coding downstream 30148 50665714 ~ 50665984 (+)
G1559067 NA non-coding downstream 35539 50671105 ~ 50671372 (+)
G1559071 NA non-coding downstream 43782 50679348 ~ 50679645 (+)
G1559075 LOC106588717 non-coding downstream 51534 50687100 ~ 50688172 (+)
G1558443 NA other upstream 413616 50219754 ~ 50220127 (+)
G1557814 NA other upstream 872777 49760428 ~ 49760966 (+)
G1557717 NA other upstream 1087934 49545549 ~ 49545809 (+)
G1556127 NA other upstream 2521091 48074636 ~ 48112652 (+)
G1556003 LOC106588626 other upstream 2728356 47903849 ~ 47905387 (+)
LOC110496482 LOC106588780 other downstream 1431276 52036488 ~ 52083470 (+)
G1560811 LOC100846955 other downstream 1621070 52256636 ~ 52257530 (+)
G1560911 NA other downstream 1719731 52355297 ~ 52355835 (+)
G1560957 NA other downstream 1805580 52441146 ~ 52441941 (+)
snrpd1 snrpd1 other downstream 2540156 53175661 ~ 53178938 (+)

Expression


Co-expression Network