G1560073


Basic Information

Item Value
gene id G1560073
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50870293 ~ 50882732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1784785
tctctctctcggaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccccagtccacctggctgtgctgcctgcggctatggaaccctgacctgttcaccagatgtgctacctgtcccagacctgctgttttcaactctctagagacagcaagagcggtagagatactctgaatgatcggctatgaaaagccaactgacattttctcctgagtaTCTGTTATTGTTCTGAGGAGGGCGGGTCTTCCTGGGCTAGAACTGGCTGTGACCGCTTGTCTCTTCTCCAAACAGATACAACCCAACACCACTGAAACCAGCCTCAGATAATAAACAAGGTCCACACGACTACTGAGCGATAAACGTGGATGgactccctctcccttcccgcACCACGGGTTCAACCCAGAATGTTTCTAGCGAGAGCTCTGTTTGGTTGAAGTCCCAGAGCGCTCCGTTTTCACCTTGTCCGATTGGTGATGAGCGGTGTCTGTCGTCGTCGTCGTCCTCACTCGACACACCTCCACGCGCCACCTGTTTCTGTCACTTGGTGTCATTGAACTCTGAAATTACATTGTACTGGTTGCAATAAAAAGGGCGTGTTATAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1784785 True 634 lncRNA 0.52 3 50870293 50882732

Neighbor

gene id symbol gene type direction distance location
thsd7aa LOC106588717 coding downstream 114301 50599944 ~ 50755992 (-)
LOC110496443 LOC106588718 coding downstream 277882 50543379 ~ 50592411 (-)
LOC110496438 LOC106588686 coding downstream 511161 50256021 ~ 50359132 (-)
LOC118941183 NA coding downstream 673079 50152023 ~ 50197214 (-)
rfa3 rfa3 coding downstream 720688 50148304 ~ 50149605 (-)
LOC110496448 LOC106588712 coding upstream 114791 50997523 ~ 51012139 (-)
LOC110496450 LOC106588689 coding upstream 163670 51046402 ~ 51049503 (-)
LOC110496449 LOC106588710 coding upstream 170035 51052767 ~ 51067584 (-)
agr2 agr2 coding upstream 211360 51094092 ~ 51096890 (-)
LOC110496457 LOC106588707 coding upstream 219147 51101879 ~ 51114958 (-)
G1560064 LOC106588714 non-coding downstream 3653 50865256 ~ 50866640 (-)
G1560047 NA non-coding downstream 38483 50820550 ~ 50831810 (-)
G1560048 NA non-coding downstream 42560 50823052 ~ 50827733 (-)
G1559298 NA non-coding downstream 94287 50775791 ~ 50776006 (-)
G1559293 NA non-coding downstream 98442 50771414 ~ 50771851 (-)
G1560082 NA non-coding upstream 72 50882804 ~ 50883054 (-)
G1560085 NA non-coding upstream 62484 50945216 ~ 50952445 (-)
G1560118 NA non-coding upstream 63800 50946532 ~ 50953707 (-)
G1560165 NA non-coding upstream 138765 51021497 ~ 51021912 (-)
G1560205 LOC106588711 non-coding upstream 201182 51083914 ~ 51084398 (-)
G1559205 NA other downstream 246310 50623091 ~ 50623983 (-)
G1558916 NA other downstream 432834 50436997 ~ 50437459 (-)
LOC110496434 LOC106588680 other downstream 836152 50023087 ~ 50034167 (-)
LOC110496463 LOC106588703 other upstream 330423 51213151 ~ 51214398 (-)
G1560339 NA other upstream 499940 51381731 ~ 51455285 (-)
trak1b LOC106588779 other upstream 1296588 52179320 ~ 52240648 (-)
G1561167 NA other upstream 1366622 52249354 ~ 52250489 (-)
LOC110496491 LOC106588724 other upstream 1474020 52352725 ~ 52396978 (-)

Expression


Co-expression Network