G1560579


Basic Information

Item Value
gene id G1560579
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51863529 ~ 51866710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1785377
ggggggggggagacaatgcaaatagtcttggtagccatttgattagctgttcagaagtcttatgacttgggggtagaagctgttaagaagacttttggacctagacttggcgctccggtactgcatgctgtgcggtagcagagagaacagactatgaCTACGTTGGCTagaatctttgacaatttttagggccttcatctgacaccgcctggtatagaggtcctgggatggcaggaagcttggccccagtgatgtactgggccgtacgcacaaccctctgtagtgccttgcggtcagaggccgagcagttgccataccaggcagtaatgcaaccagtcaggatgctctcgatggtgcagctgtagaaccttttgaggatctgaggacccatgccaaatcttttcagtctcctgaaggggaataggctttgccatcttcacgactgtcttggtgtgtttggaccatgatagtttgttggtgatgtggacaacaaggaacttgaagctctcaagctAGTCCACTACAGTTCCGTCGATGACAATGGGGGCAtactcagtcctccttttcctgtagtcatcAACAATCATCTCCATTgccttgatcacattgagggagaggttgttatcctggcaccacacggccaggtctctaacctcctccctataggctgtctcatcgttctcggtgatcaggcctaccactgttgtgttgtcggcaaacttaatgatggtgttggagtcgtttctggccatgcagtcatgggtgaacaaagagtagaggaggggactgagcacgcacccctgaggggcccccgtgttgtggatcagcgtggcagatgtattgttacttacccttaccacctgggggtggcccatcagcaagtccagcatccagttgcagagggaggtgttcagtcccagggtggagtgcaatagagattgcatcatctgtggatctgttggggcggggatgcaaattggagtgggtctagggtatctgggataatggtgttgatgtgatcaacctttcaaagcacttcatggctacagatgtgagagcttcgggcagtagtcatttaggcaggttaccttagttttcttgggtgcagggactatggtggtctgcttgaaatatgctgtcagggagaggttgaaaatgtcagtgaagacacttgccagttggtcagtgcatgctcggagtacacttcctggtaaCCCGTCTGAACCTGCGGCcttttgaatgttgacctgtttaaaggtcttactcacatcggctatggagagcgtgatcacacagtcttccggaacggCTGatacatgcttcagtgttgcttgcgagcatagaagttatttagctcatctggtaggctcgtgtcactggacagctcgtggctgtgctttcctttgtagtctgtaatagtttgcaagccctgccacatcggacgagcgttggagccggtgtagtatgattcaatcttagtcctgtattgatgctttgcctgtttgatggttcatcggagggcatagcgggatttcttataagcgtccgggttagagtcccgctccttgaaagtggcagcacTACCGTTAAACTCTGTgcgatgttgcctgtaatccatgccttctggtTGGGCATGTACGTACGGACACTGTGGACGACatcgtcgtcgatgcacttattgatgaagccagttaCTGATGTGGTggactcctcaatgccattggaagaatctgtgcaagaaaaacagtcctgtagctgagcatctgcgtcatctgaccgagtcactggtgcttcctgctttagttttagcatgtaagcaggaatcaggaggatagagttatggtcagatttgccaaatggagggcgaggaagagctttgtacacatctctgtgtgtggagtaaatgtggcCTAGAGTTATTTTTCctatggttgcacatttaacatgctgatagaaatgagctATAaattgatttaagtttccctgcattaaagtccctggccactaggagcgctgcctctggatgagtgttttcctgtttgcttatggccttatacagctcattgagtgtggtcttattgccagcattggtttgtggtggtaaatagacagctacgaacaatactctcttggtaaatagtgtggtctacagcttatcatgagatactctatctcAGGCGAGGAAaaccttaatattagattttgtgcaccagctgttgtttacaaatatacacagactgCCACCCCATGTCTTACttgaggcagctgttctatcttgtcgATGCAGCGTAAACCCTTCAAGCTGAAGGTTATCCGTGTTtatcgttcagccatgactcgtgaaacataagatgtttttaatgtcccgttggtaggatattcatgATCGTAGCTTgtctattttgttatccaatgattgtacgttggctaataggactgatggtggAGGCAGATTACACACTcgccgtcggatccttacaaggtaCCCAGACCAAAATCACAGATCTCTCCGTCTCTTTCACATGCGACTGACGGGGATTTGGgtcttgtcgggtgtctgaagtaaattcTTTGCGTTCGACTCGTTAAAGAAATAATctttgtccagtacgaggtgagtaatcgctgtcctgatatacagaagctattttcggtcataagagacagtgacataaacattatgtacaaaataagtcacAAATAACAATAGAACAATTGGTTAGGAgtccgtaaaacggcagccatctcctccggcgccatctaGCATTACTAAGTATTTATGAAATTACTGTTAAATGTTGTTACTAGTGTAATTATTACAGTACTACTATCCATGTATAAGAGCAAAGTAATGTAAAGTGTAGGGTACCTGAGCTGAGAGAAGATGGGTGGAGGAGGCTGGGACTGCCCAGAGCATTCATACGGTGACCACGTTTCTGACctccatgtctgtccctcctccactGCGGCACTCTGTGCTTCCAGAGGGTTCTCTATGACGCGTCCCGTCCTGCCAGAGAAGTCCATGGCCACCAGAGAGTTCTCAGACACACT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1785377 True 3054 lncRNA 0.48 2 51863529 51866710

Neighbor

gene id symbol gene type direction distance location
LOC110496470 LOC106588694 coding downstream 359735 51486612 ~ 51503794 (-)
LOC110496466 LOC106588698 coding downstream 434153 51426740 ~ 51429376 (-)
LOC110496464 LOC106588701 coding downstream 628601 51230478 ~ 51234928 (-)
LOC110496463 LOC106588703 coding downstream 649131 51213151 ~ 51214398 (-)
LOC110496461 lpcat1 coding downstream 658297 51168766 ~ 51205232 (-)
trak1b LOC106588779 coding upstream 312610 52179320 ~ 52240648 (-)
zgc:110239 LOC100846955 coding upstream 385737 52252447 ~ 52259991 (-)
sytl1 LOC106588777 coding upstream 394657 52261367 ~ 52269318 (-)
LOC110519830 LOC106588776 coding upstream 404561 52271271 ~ 52281875 (-)
LOC110496488 LOC106588772 coding upstream 450427 52317137 ~ 52331561 (-)
G1560619 NA non-coding downstream 2718 51856696 ~ 51860811 (-)
G1560596 NA non-coding downstream 62746 51795486 ~ 51800783 (-)
G1560561 LOC106588786 non-coding downstream 74066 51784798 ~ 51789463 (-)
G1560340 NA non-coding downstream 314673 51548409 ~ 51548856 (-)
G1560429 NA non-coding downstream 321473 51541062 ~ 51542056 (-)
G1560618 NA non-coding upstream 2206 51868916 ~ 51874046 (-)
G1560660 rl14 non-coding upstream 44286 51910996 ~ 51913901 (-)
G1560701 NA non-coding upstream 100380 51967090 ~ 51971038 (-)
G1560706 NA non-coding upstream 108229 51974939 ~ 51976724 (-)
G1560658 LOC106588725 non-coding upstream 110756 51977466 ~ 51978393 (-)
G1560339 NA other downstream 408244 51381731 ~ 51455285 (-)
thsd7aa LOC106588717 other downstream 1213276 50599944 ~ 50755992 (-)
G1559205 NA other downstream 1239546 50623091 ~ 50623983 (-)
G1558916 NA other downstream 1426070 50436997 ~ 50437459 (-)
G1561167 NA other upstream 382644 52249354 ~ 52250489 (-)
LOC110496491 LOC106588724 other upstream 490042 52352725 ~ 52396978 (-)
G1561279 NA other upstream 778279 52644989 ~ 52647777 (-)
G1562762 NA other upstream 1731940 53598650 ~ 53602694 (-)

Expression


Co-expression Network