XLOC_003478 (tfe3b)


Basic Information

Item Value
gene id XLOC_003478
gene name tfe3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25504215 ~ 25519837 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006820
TGCTGATGAATGTGATGggtagtgtgcgtgtgtgtgacatcCAAAACAAGGAAATCCTCATGCGGGTAATGGCGATTCTTCCAGCAAACTCGCTTTACTTCTAATAACATCAACCAGCTTGTTAATAGAGCGGTGGACGCAGCACAGCAGCATGTCTTCGAGAGTGTTGCTCCGGCAGCAGCTGATGCGAGAGCAGGCGCAGGAGCAGGAGAGGAGGGAGGCGCAGCAGCAGGCATCAGTCGCTCAGCTCCGCCCTGCAGACACCACTCCTGCCATCTCCGTCTCGCTGCCACCCATGGCTGCCCGGCCTCCTCCAGCACAAGTCCCGGTGGAGGTTCTGAAGGTGCAAACCCATCTGGAAAACCCAACTAAATACCACATCCAGCAGGCGCAGAGGCAGCAAGTGAAGGAGTACTTGTCCACCACACTCGGCAATAAAGTTGCCACGCAAACTCTCGGTGTGTCTCCTGTCCCGCATTCAGCCTCGGCTCCAGAAATGGGCCCATCAGCAAGCAGCGCTCCCAACAGCCCCATGGCACATCTTAATCTAGGCTCCAACAAAGAAGAGATGGATGATGTCATTGACGACATCATCAGCCTTGAGTCCAGCTTCAACGATGACATCTTGTCACTGATCGATTCTGGCCTGCAGCTCCCGAACACGCTTCCAGGAAATCTTCTGGATGTCTACAACAGTCCTGGTATGACGACTCCAACCATCACCGTCAGCAACTCCTGTCCAGCAGATCTGCCCAACATCAAAAGGGAATATACTGGTAATGGTATTGTGATCGAAACAGAGGCCAGAGCTTTCATGAAGGAGAGACAGAAGAAAGATAATCACAATCTCATTGAACGGCGGAGAAGATTCAACATAAATGACAGAATAAAGGAGTTAGGGGCTCTAATACCCAAATCCACTGATCCGGAAATGCGCTGGAACAAGGGAACCATTTTGAAGGCTTCAGTTGATTACATAAGAAAACTCCAGAAAGAGCAGCAGAGGGCCAAAGAGATCGAGATGAGACAGAAGAAACTGGAGCAATCTAACCAGGCCCTTATTCTCCGCATACAGGAACTAGAAATACAAGCACGCCACCATGGCCTTAATGCTACCGTGTCTCCAGGCCTGAACACAGAGGCATCCTTCATCCAAAACCAGCTACTGCAGCCAAATGCGTCTATGCAGGCCGGCGTCGGAGATGGTCAGCCTCAGAGCCACCTCAACATGGATGGAGCAATGGCACAGACTTCACCATCTCCTTTCCTCTCAGTACCTCCATCCGGCTCTCCGGCTGCTGTGGCTGTGAGCGGCCCGCTACATCTGGAGACTTTTAGCTTCACAGAGCTGGACGAACATGCCTCTGATTTGTACCCTGACGTTGGTCTTAGTGACATTCTGATGGATGACGTCAGGGGTTCGGATGTGCTCTTCTCCCCGATGTCGCCCGGAGCCTCCAAAACCAGCAGCCAAGGGAGCAGCGTAAATATGGAGGATGACTTGTGACCCAACTGACCGCTAGATGTATGTTTCAGTGCTTTTTCCTAATGTGGGACGCTGTGAGGTTTTTTTTAAGGGAAAGTTCacctaaaattaatattttaagtccAAAGTACACTTTGTTGCCTTCTTTCTACTAGGATTGTCAATCAAGTTCAATAgcaatcagtactgaaattttc
>TCONS_00006821
ATGTCTTCGAGAGTGTTGCTCCGGCAGCAGCTGATGCGAGAGCAGGCGCAGGAGCAGGAGAGGAGGGAGGCGCAGCAGCAGGCATCAGTCGCTCAGCTCCGCCCTGCAGACACCACTCCTGCCATCTCCGTCTCGCTGCCACCCATGGCTGCCCGGCCTCCTCCAGCACAAGTCCCGGTGGAGGTTCTGAAGGTGCAAACCCATCTGGAAAACCCAACTAAATACCACATCCAGCAGGCGCAGAGGCAGCAAGTGAAGGAGTACTTGTCCACCACACTCGGCAATAAAGTTGCCACGCAAACTCTCGGTGTGTCTCCTGTCCCGCATTCAGCCTCGGCTCCAGAAATGGGCCCATCAGCAAGCAGCGCTCCCAACAGCCCCATGGCACATCTTAATCTAGGCTCCAACAAAGAAGAGATGGATGATGTCATTGACGACATCATCAGCCTTGAGTCCAGCTTCAACGATGACATCTTGTCACTGATCGATTCTGGCCTGCAGCTCCCGAACACGCTTCCAGGAAATCTTCTGGATGTCTACAACAGTCCTGGTATGACGACTCCAACCATCACCGTCAGCAACTCCTGTCCAGCAGATCTGCCCAACATCAAAAGGGAATATACTGGTAATGGTATTGTGATCGAAACAGAGGCCAGAGCTTTCATGAAGGAGAGACAGAAGAAAGATAATCACAATCTCATTGAACGGCGGAGAAGATTCAACATAAATGACAGAATAAAGGAGTTAGGGGCTCTAATACCCAAATCCACTGATCCGGAAATGCGCTGGAACAAGGGAACCATTTTGAAGGCTTCAGTTGATTACATAAGAAAACTCCAGAAAGAGCAGCAGAGGGCCAAAGAGATCGAGATGAGACAGAAGAAACTGGAGCAATCTAACCAGGCCCTTATTCTCCGCATACAGGAACTAGAAATACAAGCACGCCACCATGGCCTTAATGCTACCGTGTCTCCAGGCCTGAACACAGAGGCATCCTTCATCCAAAACCAGCTACTGCAGCCAAATGCGTCTATGCAGGCCGGCGTCGGAGATGGTCAGCCTCAGAGCCACCTCAACATGGATGGAGCAATGGCACAGACTTCACCATCTCCTTTCCTCTCAGTACCTCCATCCGGCTCTCCGGCTGCTGTGGCTGTGAGCGGCCCGCTACATCTGGAGACTTTTAGCTTCACAGAGCTGGACGAACATGCCTCTGATTTGTACCCTGACGTTGGTCTTAGTGACATTCTGATGGATGACGTCAGGGGTTCGGATGTGCTCTTCTCCCCGATGTCGCCCGGAGCCTCCAAAACCAGCAGCCAAGGGAGCAGCGTAAATATGGAGGATGACTTGTGA

Function

symbol description
tfe3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within humoral immune response; positive regulation of transcription, DNA-templated; and regulation of osteoclast differentiation. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; ionocyte; lens placode; polster; and sensory system. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human TFE3 (transcription factor binding to IGHM enhancer 3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006959 humoral immune response biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0045670 regulation of osteoclast differentiation biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010919-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within humoral immune response; positive regulation of transcription, DNA-templated; and regulation of osteoclast differentiation. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; ionocyte; lens placode; polster; and sensory system. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human TFE3 (transcription factor binding to IGHM enhancer 3).

Ensembl:

ensembl_id ENSDARG00000019457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006820 False 1683 mRNA 0.50 9 25504215 25519837
TCONS_00006821 True 1356 mRNA 0.53 8 25508129 25519661

Neighbor

gene id symbol gene type direction distance location
XLOC_003477 gnl3l coding upstream 1724 25485774 ~ 25502491 (+)
XLOC_003476 opn1lw2 coding upstream 21009 25481046 ~ 25483206 (+)
XLOC_003475 opn1lw1 coding upstream 24178 25477643 ~ 25480037 (+)
XLOC_003474 opn1sw2 coding upstream 28812 25459697 ~ 25475403 (+)
XLOC_003473 si:dkey-13a21.4 coding upstream 68293 25430851 ~ 25435922 (+)
XLOC_003479 cxxc1b coding downstream 19861 25539698 ~ 25550845 (+)
XLOC_003480 mbd1b coding downstream 40235 25560072 ~ 25576199 (+)
XLOC_003481 ccdc120 coding downstream 64113 25583950 ~ 25618583 (+)
XLOC_003482 comtb coding downstream 100055 25619892 ~ 25631442 (+)
XLOC_003483 grm6b coding downstream 114204 25634041 ~ 25679721 (+)
XLOC_003369 CR854846.2 misc upstream 9381133 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12792219 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12809952 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12818616 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12824187 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 237980 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 276020 25181857 ~ 25228195 (+)
XLOC_003463 NA non-coding upstream 444117 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 923101 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1325277 24178823 ~ 24178938 (+)
XLOC_003487 NA non-coding downstream 309533 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 558110 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 668680 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 706245 26226082 ~ 26234069 (+)
XLOC_003497 NA non-coding downstream 1183120 26702957 ~ 26709080 (+)

Expression


Co-expression Network