G1560904


Basic Information

Item Value
gene id G1560904
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52308625 ~ 52308953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1785743
ccgtgggatgttcaaagtttctgatatttttttataacccaaccctgatctgtacttctccacaactttgtccctgacctgtttggagagctctgtggtcttcatagtgccgcttgcttggtggtctcccttgcttagtggtgttgcagtctctggggcctttcagaacaggtgtatatatactgagatcatgtgacagatcatgtgacacttagattgcacaaaggtggactttatttaactaattatgtgacttctgaaggaaattggttgcaccatatcttatttaggggcttcgtaGCAAAGCGTGTGAATACACATGCACaaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1785743 True 329 lncRNA 0.43 1 52308625 52308953

Neighbor

gene id symbol gene type direction distance location
LOC110496487 LOC106588732 coding upstream 11405 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 63181 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 147871 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 225155 52036488 ~ 52083470 (+)
topaz1 topaz1 coding upstream 288266 52003041 ~ 52020359 (+)
LOC110496490 NA coding downstream 31328 52340281 ~ 52345668 (+)
zcchc17 zcchc17 coding downstream 254577 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 291432 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 332284 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 553727 52862680 ~ 52892459 (+)
G1560896 NA non-coding upstream 8050 52300359 ~ 52300575 (+)
G1560877 NA non-coding upstream 43472 52263400 ~ 52265153 (+)
G1560812 NA non-coding upstream 47445 52260781 ~ 52261180 (+)
G1560810 LOC100846955 non-coding upstream 54779 52252375 ~ 52253846 (+)
G1560871 NA non-coding downstream 8190 52317143 ~ 52318321 (+)
G1560876 LOC106588772 non-coding downstream 13429 52322382 ~ 52331632 (+)
G1560870 LOC106588771 non-coding downstream 91631 52400584 ~ 52402286 (+)
G1560947 NA non-coding downstream 119289 52428242 ~ 52432448 (+)
G1560957 NA non-coding downstream 132193 52441146 ~ 52441941 (+)
G1560811 LOC100846955 other upstream 51095 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1673059 50633743 ~ 50635566 (+)
G1558443 NA other upstream 2088498 50219754 ~ 50220127 (+)
G1557814 NA other upstream 2547659 49760428 ~ 49760966 (+)
G1560911 NA other downstream 46344 52355297 ~ 52355835 (+)
snrpd1 snrpd1 other downstream 866769 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 968837 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1409416 53713836 ~ 53730416 (+)

Expression


Co-expression Network