G1560876 (LOC106588772)


Basic Information

Item Value
gene id G1560876
gene name LOC106588772
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52322382 ~ 52331632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1785715
tgcagccagtcaagaagCTCTCAATGGAGCAGCTCTCAATGGAGCAGCTCTCAATGGAGCAGCTCTCAATGGAGCatcctttttgaggatctgagggcccatgccaaacctttacCGTTACCGTgtcttcttcacgactgtgttggtgtgtgtggaccatgttaattccatAGTGATGTGGACATAGAGGTACTTGATTCTCTCGACCCGCTCAACTAATGtaaatgggggcgtgctcagtcctcagTTTtgctgtagtccatgatcagctcctttgtcttgctgacattgacagagaggttgttgtccttgcgcCACACTGCCAAAtcactgacctcctctctataggtggtctcatcattgtcggtgatcaggcctaccagtcgtgtcgtcagcaaatgtaattgtgttggagtcgtgcgtggcagcgcagtcgtgggtgaacagggagtacaggaggggacacaAGGCGTCTGCATGCTTCTCAGCCAAAACAGTTCTGAAGAGACAAACAACATTTTGTGCCGTTTTTGGTTTGTTTTGGTCTTCGGCTAGGTTTTTCTTTCGGCTGTTCCGGCACACCCCAAAAAATTATTGGGGCAAGCCAAAGTCAGTAGCCAAAGTCTACGCTCCTTTGTcgatgattggtcaacagtagggattcttcaatataGTCTTAATCAACGAGAGAtgactcgttttcatgcacattttttcattgaGAAACACTGCACCAAAACATCTTACTTAGATGTAAAATTCCACGACTAAGATCTCCTTGGCAAAAACTGTCAAAATTAATAACAAATTTCTTAAATTGACTAAGattaatttggactattttgtgtatacaGCGTCTCAAAACGGACAAACAGTACTACTGctgtttttttcttgtttttcaagcgaaggtaTTTTATGGGAGTATGCAAGCACACGTGTTCAAGCCACCCGAAATGAAGCATTCTGAAGCcttaagcacgcacccctgaggggcccccgtgttcaacagcgtggcagatgtgctgtttcctactctcaccacctgggggcggccagtcaagaagtccaggattcagttgcaggtGTTCAGCCTCAGGAtcctgagcttaatgatgagcttggagggcactacggtgttgaacgctgagctgtattcaattaacagcattctcaaataggtgaaataaccgaaaggttgcaggttcgaatccccaagctgattAGGTGACAAATCAGCCAGTGCCCTTAAGCGAGACGCTCTGGacaaaagcatctgctaaataccTAAAATGTAATTGTAATGTTGGGGCGAATTTGAGTGGGTCCAGGATGtctaggatgatggtgttgatgtaagcaACAACCACCCTTTCAAAGTGTTTCAtggttacagatgtgagtgctatgtgCCAATAGACAGGCTACTTTGGTGTTCTTGGGTCTACttgagtcagggagaggttgaaaatgtcagtgaagacacttaacagctggtcagcgcatgctccgaATATGTGTCCTGGTAGTCCCTCTGGTCCTAcaaccttgtgaatgttaacccgTTTAAAGGTGTTATTCACAACGGCTACGGAAAACGacatcacacagttgtccggaacagctggttgCAGGATTCAGTATTGCTTGCCTAgacgcgagcatagaaggcattgaactcgtctggtaggcttgcgtcactgagCAGCTGGGTTTTCCTTTGTAATCCAGGAtagtttgtaagccctgccacatccaacgagtgtcagagccggcgtagtaggattcgatcttagtcctgtattgacgctttgcctaaAATCCTTAGCGGAATTTCTTAGAAGTGTCCAGATTAGtgttccgctccttgaaagctgcagctctagcctttagctcagtacagatgttgcctgtaatccatggtttctggttgggatatgtacgtacggtcactgtggggacgacgttgaTGCACTTCATTAATGACGCTGGTGATTGATGTGGTAAACTCATCAATGTCATCGGATGAAtcacagaacatattccagtctgtgctagcaaaacagtcttgtagcttaGCTTCCGCTTCATCGGACCATTTCGATATTGagcgtgtcactggtacttcctgtttgagtttttgcttgtaagcaggaatcaggagaatagagttatggtcagattttccaaagggagggtgagagagagcctcgtatgtgtttgtgtgtggagtaaaggtgttctAGAGTTTTGTTGCCtgtagttgcacaggtgacatgctggtaaaacggatttcagtttccctgcattaaaatcaccagcCACGAGAAGCGCTGACTATggatgtgcattttcttgtttgcttatggccctgtACAGCTTGATGAGTATGGTCTTAGTGACCGCATCAGTTTGtgatggtaaatagacagctacaaaaaatatagatgaaaactctctcttggtaaatagtatggtctgcagTTTATCATCAGGTATTCTAACACAGGCGATAAAAACTCAAGACTACTTTAACATTAAAGATTGCGCACCAGATGTTGTTAATAAAGAGACACACCGGTCCCCTCTTCGTCTTCACCGAGGCTACTGGTCTAGACAATGGATTGAAAAAAACAgcgtccttgttcagccacgactccgagAAACATAGAATATTACAGTTCctcaggtcccgttgataggatattCTCCaacggagctcgtccagtttTTTAATCATGTGACTGTACGTTcgccaatagaacggagggtagAGGCGTTTTATTTGCTCGCCATCGTAGTCTCATCAACGTAGTCTCTTCTACCTCTCTTGCACCATCGCTTCCTCTTTCGAGTCCCGGGGATTAAGGCCTGGTCAGGAGTAAGCAGAATGACCAGAGCTGCCGATTCGTTAAAGTAGAAATTGTCATCCAAATCAAGGTTAGTGATCCCCGTTCTGATGAAATGATGGAGGAGACATGATGtacaatttttatatatatatgtatatatataagaattggtcaggagcccgtaaaacggctgCTATCCTCTGCAGCGCCATTTTACTTTGTGTGTGTTACCCGTTACCCTGTGTTTACCCTGTGTTTGCGTCTCTCCTTCATGATGTCCTTCGTGTCCTGCAGCATCTTCTCCTTCCACAGATCAAAGAAGTAGGAGGGATCTGTGTAGAACTTCAGAGCATCCTTACCATCATCCctgtactgGCTGAGGTTGTTGAGTGGTGGAGGTGGGTTGCAGGTCAGATAGGTCTCCTGTACAGGCAGCGGTAGAGAGGGTCTACAGAATAACTGCTGGTCCTGAGTCAGATTACTATGAAACGCTTTCTTCTGGGTGATGGCCTGCagagagaCCTCCTCCTCTTTAGGGTCGAGCTGGGTGACTTTGACCTGTAGACGgtccactctctctcccagtgtGTTCACCCGGACAGCAAACACCCCCGCCTGCACAAACAGCTCTCCAAACACGTCCTCTGcatacttacTGAGGCTGCCTAGCTGGCGTATGATGTTGGCAAGGCTAATGTTGGTGACACACTCCAGCTCGCTGCGGATGGTGTTGGGGATCGTCTGGCGGCACACATAGCGAGGCTCGATGTTCCTCGTCACCAATGGCATTCTGGGACGGGAGGGATAGCGGGGGGCTtccCGTCAGCCAAATCAGTCTTGTTGCTTGGTTGAGTCTTTCAGTAGAAACAAAAATGACGGTTTACTGTAACCAGGGTGGGGAGACTTGGGATAACACAGAGTAGTCCCAGATTTGTTCAACTTCTGATTGGACAAGGCTTCGACATTCCAGGCGCTGATTGGTTCCTCTCACTGTCCGTCTGTGTCAGCGGCATGGACATGGAAATGTGGACGTACAATAGGT

Function

NR:

description
LOW QUALITY PROTEIN: wiskott-Aldrich syndrome protein family member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1785715 True 3894 lncRNA 0.47 5 52322382 52331632

Neighbor

gene id symbol gene type direction distance location
LOC110496487 LOC106588732 coding upstream 25162 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 76938 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 161628 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 238912 52036488 ~ 52083470 (+)
topaz1 topaz1 coding upstream 302023 52003041 ~ 52020359 (+)
LOC110496490 NA coding downstream 8649 52340281 ~ 52345668 (+)
zcchc17 zcchc17 coding downstream 231898 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 268753 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 309605 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 531048 52862680 ~ 52892459 (+)
G1560871 NA non-coding upstream 4061 52317143 ~ 52318321 (+)
G1560904 NA non-coding upstream 13429 52308625 ~ 52308953 (+)
G1560896 NA non-coding upstream 21807 52300359 ~ 52300575 (+)
G1560877 NA non-coding upstream 57229 52263400 ~ 52265153 (+)
G1560870 LOC106588771 non-coding downstream 68952 52400584 ~ 52402286 (+)
G1560947 NA non-coding downstream 96610 52428242 ~ 52432448 (+)
G1560957 NA non-coding downstream 109514 52441146 ~ 52441941 (+)
G1560932 NA non-coding downstream 141599 52473231 ~ 52474079 (+)
G1560930 NA non-coding downstream 142646 52474278 ~ 52477907 (+)
G1560811 LOC100846955 other upstream 64852 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1686816 50633743 ~ 50635566 (+)
G1558443 NA other upstream 2102255 50219754 ~ 50220127 (+)
G1557814 NA other upstream 2561416 49760428 ~ 49760966 (+)
G1560911 NA other downstream 23665 52355297 ~ 52355835 (+)
snrpd1 snrpd1 other downstream 844090 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 946158 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1386737 53713836 ~ 53730416 (+)

Expression


Co-expression Network