G1560911


Basic Information

Item Value
gene id G1560911
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52355297 ~ 52355835 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1785750
GGGAGAGGTTAGGGTGGgagtgttgtgtggtgttgggATGGGGGTTGGGGTAAGTGTtcgggtgggggtgtggatgtggatgaggatgtTGGTTCTGGTTTGAATgaaggtgtgtgttgatgtgcgggtgtgtattgatgtgggggttggtgtgtgtgtgcgggttggtgttggggttagggtgtgtgtgtgggctcaAGCTTGTCTGAGGTGCGTGTGGACTCATGTTTGCATGAGGGTTgctgttagggtgtgtgtgtgtgttgatgtgtgcgGTAGTGTGAGTGTTAGGGTGATTGTTAGGGCTAGCGTGAGGGTTAACATTAGCGTGTACATGTGTGTTGCCGTGTGcattagcatgtgtgtgtgtagcggtgtgtgtgttagcgtgggGGCTGCTGAGCGATGCCCCTCCGTACCAATAGGGGGAGCTACAGTAACTGGGAGAATCGTACTGGGAGGGGAAGTGGTCCTTGGAAACGGTTGCCAGGTTGCGATGGGGGGGGCTCAGCGCTGTTCCACAGTGTGGCAGTAACCGT

Function

NR:

description
AT-hook DNA-binding motif-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1785750 True 539 TUCP 0.55 1 52355297 52355835

Neighbor

gene id symbol gene type direction distance location
LOC110496490 NA coding upstream 9629 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 58077 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 109853 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 194543 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 271827 52036488 ~ 52083470 (+)
zcchc17 zcchc17 coding downstream 207695 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 244550 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 285402 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 506845 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 550564 52906399 ~ 52918381 (+)
G1560876 LOC106588772 non-coding upstream 23665 52322382 ~ 52331632 (+)
G1560871 NA non-coding upstream 36976 52317143 ~ 52318321 (+)
G1560904 NA non-coding upstream 46344 52308625 ~ 52308953 (+)
G1560896 NA non-coding upstream 54722 52300359 ~ 52300575 (+)
G1560870 LOC106588771 non-coding downstream 44749 52400584 ~ 52402286 (+)
G1560947 NA non-coding downstream 72407 52428242 ~ 52432448 (+)
G1560957 NA non-coding downstream 85311 52441146 ~ 52441941 (+)
G1560932 NA non-coding downstream 117396 52473231 ~ 52474079 (+)
G1560930 NA non-coding downstream 118443 52474278 ~ 52477907 (+)
G1560811 LOC100846955 other upstream 97767 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1719731 50633743 ~ 50635566 (+)
G1558443 NA other upstream 2135170 50219754 ~ 50220127 (+)
G1557814 NA other upstream 2594331 49760428 ~ 49760966 (+)
snrpd1 snrpd1 other downstream 819887 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 921955 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1362534 53713836 ~ 53730416 (+)
G1561845 NA other downstream 1461329 53817164 ~ 53840871 (+)

Expression


Co-expression Network