G1560870 (LOC106588771)


Basic Information

Item Value
gene id G1560870
gene name LOC106588771
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52400584 ~ 52402286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1785708
ATGAACTCTGTGATGATGTAGATGGGTTCTTCAGAGACCACAGCGTACAGCTGCACCAGCTTGTCATGTCTCAGTCTCTTCATGATCTGAGCCTCTTCTAGGAAAGCCTCTGGAGACATGGTGCCTGGCTTCAATGTCTTCACTGCTACCTTGGTGGTGCCGTTCCAcatacCCATCCAGACTTCTCCAAACTGCCCGTTGCCCAGCTTCTTAATCAGCTGGAGAGATTCTCTGGGAATCTCCCACACGTCCTTGGTCTTCACCGATAGGTCGGCTAGCTTAGGCATGCCCCGCCTACAGCTGCCAATCAACCTACAGCACAAACCTG

Function

NR:

description
PREDICTED: proto-oncogene tyrosine-protein kinase Yrk-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1785708 True 328 lncRNA 0.52 2 52400584 52402286

Neighbor

gene id symbol gene type direction distance location
LOC110496490 NA coding upstream 54916 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 103364 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 155140 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 239830 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 317114 52036488 ~ 52083470 (+)
zcchc17 zcchc17 coding downstream 161244 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 198099 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 238951 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 460394 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 504113 52906399 ~ 52918381 (+)
G1560876 LOC106588772 non-coding upstream 68952 52322382 ~ 52331632 (+)
G1560871 NA non-coding upstream 82263 52317143 ~ 52318321 (+)
G1560904 NA non-coding upstream 91631 52308625 ~ 52308953 (+)
G1560896 NA non-coding upstream 100009 52300359 ~ 52300575 (+)
G1560947 NA non-coding downstream 25956 52428242 ~ 52432448 (+)
G1560957 NA non-coding downstream 38860 52441146 ~ 52441941 (+)
G1560932 NA non-coding downstream 70945 52473231 ~ 52474079 (+)
G1560930 NA non-coding downstream 71992 52474278 ~ 52477907 (+)
G1560981 NA non-coding downstream 79293 52481579 ~ 52484772 (+)
G1560911 NA other upstream 44749 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 143054 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1765018 50633743 ~ 50635566 (+)
G1558443 NA other upstream 2180457 50219754 ~ 50220127 (+)
snrpd1 snrpd1 other downstream 773436 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 875504 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1316083 53713836 ~ 53730416 (+)
G1561845 NA other downstream 1414878 53817164 ~ 53840871 (+)

Expression


Co-expression Network