G1560957


Basic Information

Item Value
gene id G1560957
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52441146 ~ 52441941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1785814
atcAGAACATGTATCTTTAAGACCAATCTTATATTAAATTAcctttatatatatattccatACAAAATAGATACCTTCGTATGGTGACAACaggggaaagaaagagatgagtgagagatgcagggagagacACATAACaacaaaatgatcaatggaacTGATGTCCTGTTCCACTGGGAATGACAAGACACAAGCTGCCTTTGGGGAAGACTATACATTGCGCACACACAGGCCGCCTTAAAGATAGGACCCTTCAGTGTTACAAACACCGGTTCCCTATGAGGGAAGACTTTTATTAACGCACACACAGGCTGCCTATGAGGGGGAGACTTTCAGAGGCAAAAGACAGAAGATGAGTTACCATGGTGACCGGTGCTCCATCTCCAGGAAACCCAGTGATGGACAAGgtgaggcagaaagagaggggtgCTAAAGAGAAATGGGGCGGGGGTCAAAGCTCAGAGGTCATAAACTCCTCTTCAGACTCAACAGGAAGTAAAAACAGGGTGTGTGTTGTGGGGGGAGTttggggtatgtgtgtgtatcctcAGACAATCTTGTTCTCCAGTGCAGCGATCCTCTTCGACACGCCCTCCAGTTTTTTCGTTAGTGCCTGTAAGGCTTCTTCTACTTTTTTCTGGAACTTAACGACAGAGTCACATTCACATGGGTCTTCCTCTGTAAAGACAGACAGCATAAAGTCA
>TU1785817
atcAGAACATGTATCTTTAAGACCAATCTTATATTAAATTAcctttatatatatattccatACAAAATAGATACCTTCGTATGGTGACAACaggggaaagaaagagatgagtgagagatgcagggagagacACATAACaacaaaatgatcaatggaacTGATGTCCTGTTCCACTGGGAATGACAAGACACAAGCTGCCTTTGGGGAAGACTATACATTGCGCACACACAGGCCGCCTTAAAGATAGGACCCTTCAGTGTTACAAACACCGGTTCCCTATGAGGGAAGACTTTTATTAACGCACACACAGGCTGCCTATGAGGGGGAGACTTTCAGAGGCAAAAGACAGAAGATGAGTTACCATGGTGACCGGTGCTCCATCTCCAGGAAACCCAGTGATGGACAAGgtgaggcagaaagagaggggtgCTAAAGAGAAATGGGGCGGGGGTCAAAGCTCAGAGGTCATAAACTCCTCTTCAGACTCAACAGGAAGTAAAAACAGGGTGTGTGTTGTGGGGGGAGTttggggtatgtgtgtgtatcctcAGACAATCTTGTTCTCCAGTGCAGCGATCCTCTTCGACACGCCCTCCAGTTTTTTTCGTTAGTGCCTGTAAGGCTTCTTCTACTTTTTTCTGGAACTTAACGACAGAGTCACATTCACATGGGTCTTCCTCTGTAAAGACAGACAGCATAAAGTCA

Function

NR:

description
PREDICTED: cartilage matrix protein isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1785814 False 704 TUCP 0.45 2 52441146 52441941
TU1785817 True 705 lncRNA 0.45 2 52441146 52441941

Neighbor

gene id symbol gene type direction distance location
LOC110496490 NA coding upstream 95478 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 143926 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 195702 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 280392 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 357676 52036488 ~ 52083470 (+)
zcchc17 zcchc17 coding downstream 121589 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 158444 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 199296 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 420739 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 464458 52906399 ~ 52918381 (+)
G1560947 NA non-coding upstream 8698 52428242 ~ 52432448 (+)
G1560870 LOC106588771 non-coding upstream 38860 52400584 ~ 52402286 (+)
G1560876 LOC106588772 non-coding upstream 109514 52322382 ~ 52331632 (+)
G1560871 NA non-coding upstream 122825 52317143 ~ 52318321 (+)
G1560904 NA non-coding upstream 132193 52308625 ~ 52308953 (+)
G1560932 NA non-coding downstream 31290 52473231 ~ 52474079 (+)
G1560930 NA non-coding downstream 32337 52474278 ~ 52477907 (+)
G1560981 NA non-coding downstream 39638 52481579 ~ 52484772 (+)
G1560961 pum1 non-coding downstream 76910 52518851 ~ 52519662 (+)
G1560964 NA non-coding downstream 110562 52552503 ~ 52553622 (+)
G1560911 NA other upstream 85311 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 183616 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1805580 50633743 ~ 50635566 (+)
G1558443 NA other upstream 2221019 50219754 ~ 50220127 (+)
snrpd1 snrpd1 other downstream 733781 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 835849 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1276428 53713836 ~ 53730416 (+)
G1561845 NA other downstream 1375223 53817164 ~ 53840871 (+)
G1561856 NA other downstream 1430232 53872173 ~ 53876930 (+)

Expression


Co-expression Network