G1560932


Basic Information

Item Value
gene id G1560932
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52473231 ~ 52474079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1785780
ATTTGGAACAGAGTGGCAAATTAGTGGCAGGGCCGTGGCGCAGAGGTCCGCCTCCCAGCGCTCAGCAGCCAATGACAGAAACAGCCTTAAAaaatgcaaatgtataaaaacaggATGGGTAACAGCAAACACAGTGTGGTGTGGCCTTCCACCAActtggcgcgcacacacacacacacacacacacacacacacacacacacacactcacactcacacactctctttctctattatTTGGCTATGCAGACTTATATGGGTACAAACACATGTTAACAGTTGGAAGGTAAGTTTAGAAAAGACAGTTCAGGTCAGTTCTGTCTGTGATGTGTGACGTCAGTCAGTCCTGCTACAGACAAACAGACCGTGAGTGACAGATTGTGTGTGAAAAAGCAGACTAGCCCCACATTCAGCAGTGAACAGGtgagacctacacacacacacacacacacaagtctgaTGTGAAATAAGAGTGAGGCATTCACTGCTTAAAAAAAAAGAGGGGGCAAAGCAGTTGAGGCGTACACACACAGGGGTACAGGTGTGACTACCTGACTATGGAAGAGCGTCAGAACTGCTGGAGCAGGTAAAATACACACCTGCCCACAGTACATTCctctcagaacacacacacacacacacacacacacacacacacacagagactagtATAGTTTGACTCCCATGCAGTTGTTCTACAGTACTGAATATATTAGAAGCTACTAGTCCAGTCGTACTGGTGTGTTGGTTATTGTTACAATCTTAGATAGAAAGCACAGCCTCCAACTCAACTCCTGTCCCCACACCTACCCACAGCCCCCACTTCAAC
>TU1785781
ATTTGGAACAGAGTGGCAAATTAGTGGCAGGGCCGTGGCGCAGAGGTCCGCCTCCCAGCGCTCAGCAGCCAATGACAGAAACAGCCTTAAAaaatgcaaatgtataaaaacaggATGGGTAACAGCAAACACAGTGTGGTGTGGCCTTCCACCAActtggcgcgcacacacacacacacacacacacacacacacacacacacacactctctttctctattatTTGGCTATGCAGACTTATATGGGTACAAACACATGTTAACAGTTGGAAGGTAAGTTTAGAAAAGACAGTTCAGGTCAGTTCTGTCTGTGATGTGTGACGTCAGTCAGTCCTGCTACAGACAAACAGACCGTGAGTGACAGATTGTGTGTGAAAAAGCAGACTAGCCCCACATTCAGCAGTGAACAGGtgagacctacacacacacacacacacacaagtctgaTGTGAAATAAGAGTGAGGCATTCACTGCTTAAAAAAAAAGAGGGGGCAAAGCAGTTGAGGCGTACACACACAGGGGTACAGGTGTGACTACCTGACTATGGAAGAGCGTCAGAACTGCTGGAGCAGGTAAAATACACACCTGCCCACAGTACATTCctctcagaacacacacacacacacacacacacacacacacacacagagactagtATAGTTTGACTCCCATGCAGTTGTTCTACAGTACTGAATATATTAGAAGCTACTAGTCCAGTCGTACTGGTGTGTTGGTTATTGTTACAATCTTAGATAGAAAGCACAGCCTCCAACTCAACTCCTGTCCCCACACCTACCCACAGCCCCCACTTCAAC
>TU1785783
ATTTGGAACAGAGTGGCAAATTAGTGGCAGGGCCGTGGCGCAGAGGTCCGCCTCCCAGCGCTCAGCAGCCAATGACAGAAACAGCCTTAAAaaatgcaaatgtataaaaacaggATGGGTAACAGCAAACACAGTGTGGTGTGGCCTTCCACCAActtggcgcgcacacacacacacacacacacacacacacacacacacactctctttctctattatTTGGCTATGCAGACTTATATGGGTACAAACACATGTTAACAGTTGGAAGGTAAGTTTAGAAAAGACAGTTCAGGTCAGTTCTGTCTGTGATGTGTGACGTCAGTCAGTCCTGCTACAGACAAACAGACCGTGAGTGACAGATTGTGTGTGAAAAAGCAGACTAGCCCCACATTCAGCAGTGAACAGGtgagacctacacacacacacacacacacaagtctgaTGTGAAATAAGAGTGAGGCATTCACTGCTTAAAAAAAAAGAGGGGGCAAAGCAGTTGAGGCGTACACACACAGGGGTACAGGTGTGACTACCTGACTATGGAAGAGCGTCAGAACTGCTGGAGCAGGTAAAATACACACCTGCCCACAGTACATTCctctcagaacacacacacacacacacacacacacacacacacacagagactagtATAGTTTGACTCCCATGCAGTTGTTCTACAGTACTGAATATATTAGAAGCTACTAGTCCAGTCGTACTGGTGTGTTGGTTATTGTTACAATCTTAGATAGAAAGCACAGCCTCCAACTCAACTCCTGTCCCCACACCTACCCACAGCCCCCACTTCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1785780 False 829 lncRNA 0.47 2 52473231 52474079
TU1785781 False 815 lncRNA 0.47 2 52473231 52474079
TU1785783 True 811 lncRNA 0.47 2 52473231 52474079

Neighbor

gene id symbol gene type direction distance location
LOC110496490 NA coding upstream 127563 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 176011 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 227787 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 312477 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 389761 52036488 ~ 52083470 (+)
zcchc17 zcchc17 coding downstream 89451 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 126306 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 167158 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 388601 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 432320 52906399 ~ 52918381 (+)
G1560957 NA non-coding upstream 31290 52441146 ~ 52441941 (+)
G1560947 NA non-coding upstream 40783 52428242 ~ 52432448 (+)
G1560870 LOC106588771 non-coding upstream 70945 52400584 ~ 52402286 (+)
G1560876 LOC106588772 non-coding upstream 141599 52322382 ~ 52331632 (+)
G1560871 NA non-coding upstream 154910 52317143 ~ 52318321 (+)
G1560930 NA non-coding downstream 199 52474278 ~ 52477907 (+)
G1560981 NA non-coding downstream 7500 52481579 ~ 52484772 (+)
G1560961 pum1 non-coding downstream 44772 52518851 ~ 52519662 (+)
G1560964 NA non-coding downstream 78424 52552503 ~ 52553622 (+)
G1561006 NA non-coding downstream 97119 52571198 ~ 52607998 (+)
G1560911 NA other upstream 117396 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 215701 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1837665 50633743 ~ 50635566 (+)
snrpd1 snrpd1 other downstream 701643 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 803711 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1244290 53713836 ~ 53730416 (+)
G1561845 NA other downstream 1343085 53817164 ~ 53840871 (+)
G1561856 NA other downstream 1398094 53872173 ~ 53876930 (+)

Expression


Co-expression Network