Gene
RNA
| Item | Value |
|---|---|
| gene id | G1560961 |
| gene name | pum1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 52518851 ~ 52519662 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| pum1 | Enables mRNA binding activity. Involved in pole plasm mRNA localization. Predicted to be active in cytosol. Is expressed in ovary. Human ortholog(s) of this gene implicated in cerebellar ataxia type 47. Orthologous to human PUM1 (pumilio RNA binding family member 1). |
| description |
|---|
| pumilio homolog 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1785821 | True | 252 | lncRNA | 0.54 | 2 | 52518851 | 52519662 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110496490 | NA | coding | upstream | 173183 | 52340281 ~ 52345668 (+) |
| LOC110496487 | LOC106588732 | coding | upstream | 221631 | 52294668 ~ 52297220 (+) |
| si:dkey-166k12.1 | LOC106588778 | coding | upstream | 273407 | 52235397 ~ 52245444 (+) |
| cck-n | cck-n | coding | upstream | 358097 | 52155121 ~ 52160754 (+) |
| LOC110496482 | LOC106588780 | coding | upstream | 435381 | 52036488 ~ 52083470 (+) |
| zcchc17 | zcchc17 | coding | downstream | 43868 | 52563530 ~ 52570280 (+) |
| dclk3 | LOC106588742 | coding | downstream | 80723 | 52600385 ~ 52606655 (+) |
| cyhr1 | LOC106588755 | coding | downstream | 121575 | 52641237 ~ 52644819 (+) |
| susd5 | LOC106588743 | coding | downstream | 343018 | 52862680 ~ 52892459 (+) |
| fkbp9 | LOC106588749 | coding | downstream | 386737 | 52906399 ~ 52918381 (+) |
| G1560981 | NA | non-coding | upstream | 34079 | 52481579 ~ 52484772 (+) |
| G1560930 | NA | non-coding | upstream | 40944 | 52474278 ~ 52477907 (+) |
| G1560932 | NA | non-coding | upstream | 44772 | 52473231 ~ 52474079 (+) |
| G1560957 | NA | non-coding | upstream | 76910 | 52441146 ~ 52441941 (+) |
| G1560947 | NA | non-coding | upstream | 86403 | 52428242 ~ 52432448 (+) |
| G1560964 | NA | non-coding | downstream | 32841 | 52552503 ~ 52553622 (+) |
| G1561006 | NA | non-coding | downstream | 51536 | 52571198 ~ 52607998 (+) |
| G1561004 | NA | non-coding | downstream | 125298 | 52644960 ~ 52647777 (+) |
| G1561059 | NA | non-coding | downstream | 152763 | 52672425 ~ 52672735 (+) |
| G1561062 | pdcd6ip | non-coding | downstream | 166986 | 52686648 ~ 52687158 (+) |
| G1560911 | NA | other | upstream | 163016 | 52355297 ~ 52355835 (+) |
| G1560811 | LOC100846955 | other | upstream | 261321 | 52256636 ~ 52257530 (+) |
| G1559041 | thsd7a | other | upstream | 1883285 | 50633743 ~ 50635566 (+) |
| snrpd1 | snrpd1 | other | downstream | 656060 | 53175661 ~ 53178938 (+) |
| G1561544 | LOC106588750 | other | downstream | 758128 | 53277790 ~ 53288465 (+) |
| LOC110514975 | LOC106588804 | other | downstream | 1198707 | 53713836 ~ 53730416 (+) |
| G1561845 | NA | other | downstream | 1297502 | 53817164 ~ 53840871 (+) |
| G1561856 | NA | other | downstream | 1352511 | 53872173 ~ 53876930 (+) |
