G1560964


Basic Information

Item Value
gene id G1560964
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52552503 ~ 52553622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1785824
acacacacacacacctgtctcatCCAAGTAAACCACTTCAGAAATACagccctcctatcctctcctctcttccttcgtGGAAACGCTCCCTGACCAGACCTATTGTATGTTGGTGAAATAAATCAGTGTCCTTCATATATTCCTTTCATCAATATCATCAGGTCAGACCAGTGATACTGTATCTttagggatggatggaaggaaagagggagtgaaTGAAGTGTAAGGAGAGAATACACGATCAACCCCTCATCACCAAACAAAAGCAACAACCATTCATCAGCCAGATATGTACATGCACAGAATCCCCCATATCTTTACCCAGAGACACTAAAGCCCAATCTCTAACCAGTCCATTTTTGCCGTGATTGGGTTTAAACAAAGTCACCCTGTCACAACAGAACTAGGGACAAGCTTGGAATTCGACATTCGACTGTTCTATTACAACATCACATTCTAAAACGACAACATGAAGAGCTGTATCCCATGTGACTTCGAGGCCCCTTCCACAATAGTTCAGAGGTCATCCAGCTAGTCCTGtagcgccacacacacacacagggtcgcAGGAATGTGGAGAGCCGGTAGGTGCAGTGTCCTCTCAATATCCTCAGTGTCCATTAGGATGTGACCACGCCCAGTGTCTCCCCGCCATCTCCCCCTGCTTCCCCCTAGAACTGCTGGTACATTCACCTCAGGGGTGTCAGTCAGTTTACCCTTggttaacacatacacacacggtttcacatacacacacaggtgagTCTATCGTTCAGTTGTACTGTGACACACAGAGTGAATGTTCTATTCCCATGGCGACTCTGCTTCCCTGCTGAGGTATTGTCTGATAGGTGCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1785824 True 857 lncRNA 0.47 2 52552503 52553622

Neighbor

gene id symbol gene type direction distance location
LOC110496490 NA coding upstream 206835 52340281 ~ 52345668 (+)
LOC110496487 LOC106588732 coding upstream 255283 52294668 ~ 52297220 (+)
si:dkey-166k12.1 LOC106588778 coding upstream 307059 52235397 ~ 52245444 (+)
cck-n cck-n coding upstream 391749 52155121 ~ 52160754 (+)
LOC110496482 LOC106588780 coding upstream 469033 52036488 ~ 52083470 (+)
zcchc17 zcchc17 coding downstream 9908 52563530 ~ 52570280 (+)
dclk3 LOC106588742 coding downstream 46763 52600385 ~ 52606655 (+)
cyhr1 LOC106588755 coding downstream 87615 52641237 ~ 52644819 (+)
susd5 LOC106588743 coding downstream 309058 52862680 ~ 52892459 (+)
fkbp9 LOC106588749 coding downstream 352777 52906399 ~ 52918381 (+)
G1560961 pum1 non-coding upstream 32841 52518851 ~ 52519662 (+)
G1560981 NA non-coding upstream 67731 52481579 ~ 52484772 (+)
G1560930 NA non-coding upstream 74596 52474278 ~ 52477907 (+)
G1560932 NA non-coding upstream 78424 52473231 ~ 52474079 (+)
G1560957 NA non-coding upstream 110562 52441146 ~ 52441941 (+)
G1561006 NA non-coding downstream 17576 52571198 ~ 52607998 (+)
G1561004 NA non-coding downstream 91338 52644960 ~ 52647777 (+)
G1561059 NA non-coding downstream 118803 52672425 ~ 52672735 (+)
G1561062 pdcd6ip non-coding downstream 133026 52686648 ~ 52687158 (+)
G1561019 clasp2 non-coding downstream 192674 52746296 ~ 52750923 (+)
G1560911 NA other upstream 196668 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 294973 52256636 ~ 52257530 (+)
G1559041 thsd7a other upstream 1916937 50633743 ~ 50635566 (+)
snrpd1 snrpd1 other downstream 622100 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 724168 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 1164747 53713836 ~ 53730416 (+)
G1561845 NA other downstream 1263542 53817164 ~ 53840871 (+)
G1561856 NA other downstream 1318551 53872173 ~ 53876930 (+)

Expression


Co-expression Network