G1561366


Basic Information

Item Value
gene id G1561366
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52632681 ~ 52635148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786267
CTTTTATCAAGGGGCCCAATGTGTGGCATAAAAACAcactccacaccatcacaccaccatcaCCAGCCTGCAATGTTGACATGGCATGATGGATGCACGTACTCGTGTGGTTTTCTCCATACCGTGGTACTCCCATCAGTGTGAAACAgcaggaaccgggattcatcagaccaggcaatgttttcccAATTCTCCAGTGTCCAGTGTTTTCATTCCTTAGCCCACTGCAACTGCAGTTTCATGTTTTTTGCTGAAATAAGTGGAACTCTGTAAGGTCATCGGCTGCCAAACCCCATTCGTCTCAAGATACAACAAGTTGTGCATTCTTTTATGGGTCTTTGGGCAACAATGTTGTAATgggctgtctcctctcctttgtcttcctaatgttttgtacaccaaAAAAGTGAGTATACATTGATGGATAAAGAGTGAGTGTTGAGGCTTCCATCGTACTACAATCATTTTCTTGGCAGCCTTTAGGCCAGCAACAAATCAGATCAAAGTGTATTGGTTGTGTAcacagattagcagatgttatgacAGGTTCAGCGAACAGTGCAATACCTAGCAATAAAACAATTATTACACACATAATCCagcaaaatacaaaaaaataagttacataggctgagccatgactagaatacagttaTACATATAAAATGGGTGaaacaatatgtaaacattattaaagtgaccagtgttcaatgactatgtacatagggcagcagtctcttaGGTGCAGCAGGGTAGAATACCAGATGGAAGCCGGctagaacagtgactaaggttaagggcagggtactgggtggaggtcagctagaacagtaactaaggttcagggcagggtaccgggtggaggtcagctagaacagtgactaaggttcagggcagggtaccgggtggAGGTAAACTAGAA
>TU1786268
gtactgggtggaggtcagcTAGAATAGtaactaaggttcagggcagggtactgggtggaggtcagctagaacagtaactaaggttcagggcagggtaccgggtagaggtcagctagaacagtgactaaggttcagggcagggtaccgggtggaggtcagctagaacagtgactaaggttcagggcagggtactgggtggaggtcagctagaacagtgactaaggttaagggcagggtactgggtggaggtcagctagaacagtaactaaggttcagggcagggtaccgggtggaggtcagctagaacagtgactaaggttcagggcagggtaccgggtggAGGTAAACTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786267 False 922 lncRNA 0.44 2 52632681 52635148
TU1786268 True 353 lncRNA 0.54 2 52632681 52633827

Neighbor

gene id symbol gene type direction distance location
fabp3 LOC100136763 coding downstream 57480 52571332 ~ 52575201 (-)
snrnp40 LOC106588762 coding downstream 68942 52558640 ~ 52563739 (-)
nkain1 nkain1 coding downstream 75028 52552468 ~ 52557653 (-)
pum1 pum1 coding downstream 81054 52514685 ~ 52551627 (-)
LOC118941185 sdc3 coding downstream 121039 52473210 ~ 52511642 (-)
arpp21 LOC106588747 coding upstream 14723 52649871 ~ 52672721 (-)
LOC110496501 pdcd6ip coding upstream 42273 52677421 ~ 52704871 (-)
ubp1 LOC106588748 coding upstream 77405 52712553 ~ 52728916 (-)
clasp2 clasp2 coding upstream 96361 52731509 ~ 52824972 (-)
fbxl2 LOC106588753 coding upstream 203116 52838264 ~ 52858741 (-)
G1561290 NA non-coding downstream 20582 52609103 ~ 52612099 (-)
G1561306 NA non-coding downstream 219678 52411530 ~ 52413003 (-)
G1561305 NA non-coding downstream 220301 52411046 ~ 52412380 (-)
LOC110496491 LOC106588724 non-coding downstream 236086 52352725 ~ 52396978 (-)
G1561239 NA non-coding downstream 282378 52347881 ~ 52350303 (-)
G1561285 NA non-coding upstream 5169 52640317 ~ 52641070 (-)
G1561368 NA non-coding upstream 13593 52648741 ~ 52648999 (-)
G1561369 NA non-coding upstream 19626 52654774 ~ 52656142 (-)
G1561375 NA non-coding upstream 36609 52671757 ~ 52672081 (-)
G1561378 NA non-coding upstream 39802 52674950 ~ 52675170 (-)
G1561167 NA other downstream 382192 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 449474 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1177396 51381731 ~ 51455285 (-)
LOC110496463 LOC106588703 other downstream 1418537 51213151 ~ 51214398 (-)
G1561279 NA other upstream 9841 52644989 ~ 52647777 (-)
G1562762 NA other upstream 963502 53598650 ~ 53602694 (-)
tomm7 NA other upstream 986752 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1117258 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1239262 53874410 ~ 53875592 (-)

Expression


Co-expression Network