G1561279


Basic Information

Item Value
gene id G1561279
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52644989 ~ 52647777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786175
AGTTTCCATGATCTTTAATAAAAAGGCAGCCATAGTGAGATGAGTCAGTGAGTCTATTGGTATAGAGACAAAAAGCATTAAAACACAGAATACAAGCCCTAGATAGGCCTGGAGGTGAGACAGATCTATCGAAATACTCAACCTAGATAGATCTGTCTTTACTCCTGACCTATCACAGTAGATTCTACTTTTAGTAATGTCACTCATCATCATAGCGTCACTCAAGTAAGTCTAACGCTCTAAACATGTCACCATAGTAATGCACCACACCCaccccctatacacacacacacactctcacacacacactgccccaaaGGGTTCTCCCCCTTTAGAACCGGAGTCATGGTCTAGTCCTCTAGAACAAGGTTGAGCTGGTGGACCATTCAGGTTATATTTTCCCTCTCTCTGAGATGAACCACCCTCCCATCGCCAATAACCTTATCTGAGACTAGAAGACTTGGGGTACCTCCCCAAGCTAATGCCTACACTTCAGCTCAGAGGACCAACACAGTCTCGTGGCACGCAGACAAACTGGGTTCAAACCCCGGGCTTCCCCTCTCTCAGAGCAAGCTGGGGTTCTCCAATTCTAGCAGGTCTCTAGTACAGACCAACCAGAGCAGAGGGAGGAgtccacatgtgtgtttataGGGATGTGTTCACTTGGGCCCAAAATTAAtctgtctctccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaaacaaaaaaaactaactACAAAGGAAAAGTTCACAGGTATTTAAATATTCAGGGTTAAAAGTAAATATGAATTGGTATAAGTTAGCTTATAACGTTAATATATAAATCACAACTAATGTTTAAAGGGCTAATTAAAAAGGAGCATGCAGAACACCTCTCCTGTGTGTCAAAGGACAAAACACAGCCATCTTGGCTCTGGTCTTGGCTGCTCTCAGATACAAAATGAACACCTGTCCTAAACACACAGACTAGGATCAGGTCAGGGagcaagtgagtgtgtgtgtatacaggtggctcaaagacacacatacaccctTTACCTCTCCATTGGACAAACTAACTGAGTGGTCAACAGAATTCAAAATTCACATCTTTGGAACACGCGCGGACCATCCTGCTTTGGTTGGTACaatgcattcgaaaagtattcagaccccttgatttaaaaaaaaaaaaaaaaacattgttacgtccttattctaaaatgatttaAATgaaaaaatgtcctcatcaatctactacacacaataccccaaaatgacaagtgaaaacatttttttttttttttaagtttgcattttttatttatttataataccttattacataaatattcagaccctttgctatgagactcaaaactcagctcaggtgcatcccgtttccattgatcatccttgagatgtttctacaacttggtgtccacctgtggtaaattaatttgattggacatgatttggaaatgcacacacatctatataaggtcccacagttcacagtgcatgtcaaagtaaaaaccaatccatgaggtcgaaggaattgtccatagagctccgagacaggattgtgccgaggcacagatctggggaagggtaccaaaacatttctgcagcattgaaggtctccaagaacacagtggcctccatcattcttaaatggaagaaatttggaaccaccaagactgttccaagagctggccacctggccaaactgagcattcgggggagaagggccttggtcagggaggtgactaagaacccgattggagctctgtcagagctcctctgtggatatgggagaaccttccagaaggacagccatctctgcagcactctaccaatcaggcctttatgatagaatggccagacagaaaccactcctcagGAAAAGCCACCTAACAGCCCATTtgcctaaaggactcagaccttgagaaacaagattctctggtccgatgaaaccaaaattgaactctttggcccgaatgccaagagtcacgtctggaggaaacctggcaccatctgtggcagggattgggagattagtcaggatcgagggaaagatgaacggagcaaagtacagtgagatccttgatgaaaacctgctccacagcttgaaatgatctgcagagaagaatggggagaaaccccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagaattaagggtgtaatcgctgccaaaggtgtttcaacgaagtactgagtaaagggtctgaatacttatgtaaatgtgctatttcagtttttatttataataaaatttctaaacatgtttttggtttgtcattatggggtattgtgtgtagaataattattttagaataaggctgtagcgtaacaaaatgtggaaaggggtctgaatactttccgaatgcactgtatgtgctaCCGTAGGCTCAGGTGTCACCACTGAGTCCATAGCAacaacaccctctctcccctAGCAACATCCCCGTCTCCATAGGAAGAACCATGTCAGTCTCTACAGACAAATTCCCCTGGCAACACCACCTTGTCTTCATAGCAACAATGAAAGCACCCCAAGTTAGGGTTCTATAAAACTCTCAGAAGTATGTCAgccagtggtgtgtgtgtctgtgtaaagaGGTATCAGTGGTTCAGTGGTGTATCACTTTAATCTCAAACTTCAGGGGGTGAacaagctctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786175 True 2789 TUCP 0.43 1 52644989 52647777

Neighbor

gene id symbol gene type direction distance location
arhgap4b LOC100380863 coding downstream 7254 52606702 ~ 52637735 (-)
fabp3 LOC100136763 coding downstream 69788 52571332 ~ 52575201 (-)
snrnp40 LOC106588762 coding downstream 81250 52558640 ~ 52563739 (-)
nkain1 nkain1 coding downstream 87336 52552468 ~ 52557653 (-)
pum1 pum1 coding downstream 93362 52514685 ~ 52551627 (-)
arpp21 LOC106588747 coding upstream 2094 52649871 ~ 52672721 (-)
LOC110496501 pdcd6ip coding upstream 29644 52677421 ~ 52704871 (-)
ubp1 LOC106588748 coding upstream 64776 52712553 ~ 52728916 (-)
clasp2 clasp2 coding upstream 83732 52731509 ~ 52824972 (-)
fbxl2 LOC106588753 coding upstream 190487 52838264 ~ 52858741 (-)
G1561285 NA non-coding downstream 3919 52640317 ~ 52641070 (-)
G1561366 NA non-coding downstream 9841 52632681 ~ 52635148 (-)
G1561367 NA non-coding downstream 10727 52633488 ~ 52634262 (-)
G1561290 NA non-coding downstream 32890 52609103 ~ 52612099 (-)
G1561306 NA non-coding downstream 231986 52411530 ~ 52413003 (-)
G1561368 NA non-coding upstream 964 52648741 ~ 52648999 (-)
G1561369 NA non-coding upstream 6997 52654774 ~ 52656142 (-)
G1561375 NA non-coding upstream 23980 52671757 ~ 52672081 (-)
G1561378 NA non-coding upstream 27173 52674950 ~ 52675170 (-)
G1561288 NA non-coding upstream 27972 52675749 ~ 52740009 (-)
LOC110496491 LOC106588724 other downstream 287679 52352725 ~ 52396978 (-)
G1561167 NA other downstream 394500 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 461782 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1189704 51381731 ~ 51455285 (-)
LOC110496463 LOC106588703 other downstream 1430845 51213151 ~ 51214398 (-)
G1562762 NA other upstream 950873 53598650 ~ 53602694 (-)
tomm7 NA other upstream 974123 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1104629 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1226633 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 1241932 53887137 ~ 53895002 (-)

Expression


Co-expression Network