Gene
RNA
| Item | Value |
|---|---|
| gene id | G1561368 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 52648741 ~ 52648999 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1786270 | True | 259 | lncRNA | 0.47 | 1 | 52648741 | 52648999 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| arhgap4b | LOC100380863 | coding | downstream | 11006 | 52606702 ~ 52637735 (-) |
| fabp3 | LOC100136763 | coding | downstream | 73540 | 52571332 ~ 52575201 (-) |
| snrnp40 | LOC106588762 | coding | downstream | 85002 | 52558640 ~ 52563739 (-) |
| nkain1 | nkain1 | coding | downstream | 91088 | 52552468 ~ 52557653 (-) |
| pum1 | pum1 | coding | downstream | 97114 | 52514685 ~ 52551627 (-) |
| arpp21 | LOC106588747 | coding | upstream | 872 | 52649871 ~ 52672721 (-) |
| LOC110496501 | pdcd6ip | coding | upstream | 28422 | 52677421 ~ 52704871 (-) |
| ubp1 | LOC106588748 | coding | upstream | 63554 | 52712553 ~ 52728916 (-) |
| clasp2 | clasp2 | coding | upstream | 82510 | 52731509 ~ 52824972 (-) |
| fbxl2 | LOC106588753 | coding | upstream | 189265 | 52838264 ~ 52858741 (-) |
| G1561285 | NA | non-coding | downstream | 7671 | 52640317 ~ 52641070 (-) |
| G1561366 | NA | non-coding | downstream | 13593 | 52632681 ~ 52635148 (-) |
| G1561367 | NA | non-coding | downstream | 14479 | 52633488 ~ 52634262 (-) |
| G1561290 | NA | non-coding | downstream | 36642 | 52609103 ~ 52612099 (-) |
| G1561306 | NA | non-coding | downstream | 235738 | 52411530 ~ 52413003 (-) |
| G1561369 | NA | non-coding | upstream | 5775 | 52654774 ~ 52656142 (-) |
| G1561375 | NA | non-coding | upstream | 22758 | 52671757 ~ 52672081 (-) |
| G1561378 | NA | non-coding | upstream | 25951 | 52674950 ~ 52675170 (-) |
| G1561288 | NA | non-coding | upstream | 26750 | 52675749 ~ 52740009 (-) |
| G1561396 | NA | non-coding | upstream | 130383 | 52779382 ~ 52779744 (-) |
| G1561279 | NA | other | downstream | 964 | 52644989 ~ 52647777 (-) |
| LOC110496491 | LOC106588724 | other | downstream | 291431 | 52352725 ~ 52396978 (-) |
| G1561167 | NA | other | downstream | 398252 | 52249354 ~ 52250489 (-) |
| trak1b | LOC106588779 | other | downstream | 465534 | 52179320 ~ 52240648 (-) |
| G1560339 | NA | other | downstream | 1193456 | 51381731 ~ 51455285 (-) |
| G1562762 | NA | other | upstream | 949651 | 53598650 ~ 53602694 (-) |
| tomm7 | NA | other | upstream | 972901 | 53621900 ~ 53628443 (-) |
| G1562816 | LOC100136012 | other | upstream | 1103407 | 53752406 ~ 53752683 (-) |
| G1562828 | NA | other | upstream | 1225411 | 53874410 ~ 53875592 (-) |
| mrpl3 | mrpl3 | other | upstream | 1240710 | 53887137 ~ 53895002 (-) |
