G1561378



Basic Information


Item Value
gene id G1561378
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52674950 ~ 52675170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1786280
atccaattgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcaggagagacgaaggttgaaagtcatgcgtcctccgatacacaacctaagggggatgaccgcggcagctttccaatctttgggcatcttagacgatacgaaagaggggTTGAATAGGCTAGAAATAGGGGTTACAACAATTTCGGCTGAAAGttttagagagggtcc

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1786280 True 221 lncRNA 0.48 1 52674950 52675170

Neighbor


gene id symbol gene type direction distance location
arpp21 LOC106588747 coding downstream 2229 52649871 ~ 52672721 (-)
arhgap4b LOC100380863 coding downstream 37215 52606702 ~ 52637735 (-)
fabp3 LOC100136763 coding downstream 99749 52571332 ~ 52575201 (-)
snrnp40 LOC106588762 coding downstream 111211 52558640 ~ 52563739 (-)
nkain1 nkain1 coding downstream 117297 52552468 ~ 52557653 (-)
LOC110496501 pdcd6ip coding upstream 2251 52677421 ~ 52704871 (-)
ubp1 LOC106588748 coding upstream 37383 52712553 ~ 52728916 (-)
clasp2 clasp2 coding upstream 56339 52731509 ~ 52824972 (-)
fbxl2 LOC106588753 coding upstream 163094 52838264 ~ 52858741 (-)
LOC110496507 LOC106588754 coding upstream 225501 52900671 ~ 52905814 (-)
G1561375 NA non-coding downstream 2869 52671757 ~ 52672081 (-)
G1561369 NA non-coding downstream 18808 52654774 ~ 52656142 (-)
G1561368 NA non-coding downstream 25951 52648741 ~ 52648999 (-)
G1561285 NA non-coding downstream 33880 52640317 ~ 52641070 (-)
G1561366 NA non-coding downstream 39802 52632681 ~ 52635148 (-)
G1561288 NA non-coding upstream 579 52675749 ~ 52740009 (-)
G1561396 NA non-coding upstream 104212 52779382 ~ 52779744 (-)
G1562427 NA non-coding upstream 151880 52827050 ~ 52831250 (-)
G1562451 NA non-coding upstream 231522 52906692 ~ 52918374 (-)
G1562450 LOC106588746 non-coding upstream 321486 52996656 ~ 53084936 (-)
G1561279 NA other downstream 27173 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 317640 52352725 ~ 52396978 (-)
G1561167 NA other downstream 424461 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 491743 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1219665 51381731 ~ 51455285 (-)
G1562762 NA other upstream 923480 53598650 ~ 53602694 (-)
tomm7 NA other upstream 946730 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1077236 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1199240 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 1214539 53887137 ~ 53895002 (-)

Expression



Co-expression Network