G1561288


Basic Information

Item Value
gene id G1561288
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52675749 ~ 52740009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786184
acctcccctctccccccttcctctctcctcacctctctcctctaccctctctccctccctcctctaccctctctcctctaccctctctccctcctcttccctctctctctccctccctcatctaccctctcgctcttcttccatccctccctctacacTTACTCCCTCTACATACTCATCTACGAACCAGCtcctctatttatttattttttttcataTTATTTTTCTAATTATTGCTTTAATTCTTTAAGTCCTAACTTTTCTTCCTGCTATACCTGACTTCCTGGTATGGGCCTAGGTCAAAAATATACAGGTTAGGATAAGAGGATTCCATAAGTCTTTGCATAAATGCAGAAGAATTCTAAACAATGGGACTAGCAATGCGAGCCAAAATGACTGGAAGTGAATTTTAGCAGTACAGAAAGTTTGCTATCAAGTGGAAAATTAACACAATTGTAGTGAATTTCAGCGAACTAGTCAGCAAACACATAGCATAACTGTTTTACTGTCATTCTGTTCATTTAAATGTGTTTCTAGTTATCTACAGACCCTTTATTTTTCCGACCGATTGTCACATTTTCAATGCTAATCCTGTAGAATCAGCAGTGGCACCCGGTCCAATTCATTTGTTTATTTTCAAATGCTGCCGCATGGAATTATTGATTATTGCGTTGTCCTAACCTGTATATACTCGGCCTAGATATAGAACACTAGAGGAGCTGCATGTCATTCTTGGATGAGGAAGGCGTGGCATGATTCCTTATTTGGGACAAGTGGGAGGCGTCACATTCAATGTCACTGAATGAAGAACCTGAGGACCCAGGGTTGTATTCAGTAGGGAGAAAACGTTTAGAAACGGAATGAAATGGGGGTTTACAGCTTGAACTTTTGCAATAAGAGAAGCAATTCTTCCTTGTCTGTTTTCAAACCGTTTTGCTACTGAATACGGCCCAGCTACGATCACTCAGCTTAACGCCTGGCGCTTCTATAACAACTATATCATATTTTTGTAATGTACTTAGGTAATAATCCAATAAAAATGGCTGTCGGTTTTTCTAATTTAGATAAGGACTGTTGGAGATGcactctcgctgtctctgttctgtctccctctcaatTATCACTCCTCTctatcactcccctctctccatcactcctctcctctctctctctgtggggatGTGTCTTTCTGTTTTACAATCAGAGTAAAGCTGTAAATGGCTGTAGATGTTTTTCTGGGATAAAGGTTATTATAGATAAAGACTGTGGTTAACCCAACGACACAGTGTTTCTCTTTGGTTCTAATGTGATTAAAACACCTCTGCATaccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786184 True 1332 lncRNA 0.41 2 52675749 52740009

Neighbor

gene id symbol gene type direction distance location
arpp21 LOC106588747 coding downstream 3028 52649871 ~ 52672721 (-)
arhgap4b LOC100380863 coding downstream 38014 52606702 ~ 52637735 (-)
fabp3 LOC100136763 coding downstream 100548 52571332 ~ 52575201 (-)
snrnp40 LOC106588762 coding downstream 112010 52558640 ~ 52563739 (-)
nkain1 nkain1 coding downstream 118096 52552468 ~ 52557653 (-)
fbxl2 LOC106588753 coding upstream 98255 52838264 ~ 52858741 (-)
LOC110496507 LOC106588754 coding upstream 160662 52900671 ~ 52905814 (-)
LOC110496850 LOC106588723 coding upstream 178675 52918684 ~ 53015298 (-)
LOC110496514 LOC106588757 coding upstream 443334 53183343 ~ 53187737 (-)
mturn LOC106588759 coding upstream 448066 53188075 ~ 53195009 (-)
G1561378 NA non-coding downstream 579 52674950 ~ 52675170 (-)
G1561375 NA non-coding downstream 3668 52671757 ~ 52672081 (-)
G1561369 NA non-coding downstream 19607 52654774 ~ 52656142 (-)
G1561368 NA non-coding downstream 26750 52648741 ~ 52648999 (-)
G1561285 NA non-coding downstream 34679 52640317 ~ 52641070 (-)
G1561396 NA non-coding upstream 39373 52779382 ~ 52779744 (-)
G1562427 NA non-coding upstream 87041 52827050 ~ 52831250 (-)
G1562451 NA non-coding upstream 166683 52906692 ~ 52918374 (-)
G1562450 LOC106588746 non-coding upstream 256647 52996656 ~ 53084936 (-)
G1562458 NA non-coding upstream 296379 53036388 ~ 53039622 (-)
G1561279 NA other downstream 27972 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 318439 52352725 ~ 52396978 (-)
G1561167 NA other downstream 425260 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 492542 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1220464 51381731 ~ 51455285 (-)
G1562762 NA other upstream 858641 53598650 ~ 53602694 (-)
tomm7 NA other upstream 881891 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 1012397 53752406 ~ 53752683 (-)
G1562828 NA other upstream 1134401 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 1149700 53887137 ~ 53895002 (-)

Expression


Co-expression Network