G1561478 (LOC106588754)


Basic Information

Item Value
gene id G1561478
gene name LOC106588754
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52900686 ~ 52904060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786465
GGTTTTATTATTAAAGAACCATGTGAATATCTTTATATATTTCCTTGTAAGACAGTGAACAGTTTGATTTAAAACATGGACAATAGACAAGAGGGGAGTGAACATACATAACAGAGAATGGCCACATATCACTATCATCACCAATTTAATACCACAATATCACTCACTGTCCGTACCTCTGCACTGTACATGTTAGTGCACATGATCCAGaactataaaaaaaaacatgatttaaaaGGTCATATAAGCACATTAAAAAAATGGAAccaatttgagccaatcagaaccTCCGGAACCTCCGAATAAATACGACCCAGTGGGAGGGACCAAGGCCCGGCGGCATTCTGGGAAAACCTGCCGTCGCTCATTTCTGTCATTTAGTTcagctttttctttctttctctatatctttctttccttctttattTTCAGTGCGTCCAGAGTGTGCTACTGATCCTAAGCATCCAGGAACTCATCTAGAAACTCCATCACTTccccctcgTCATCGCTCGCTAGGTGTTGTCTGGAGAACTCAAGCATCTCTAGCTGCATGGTGGTCTGGTTCAAGTACCGTACTGcctccgaTCTAGGTAAGAAATCTTCGTCGCTGAGTCCGTATTTGTCTCTGTGGTACTGGTAATACACCACGTTGTTCTTCATCACCTCATCACTGGGGTCAAATAACATGTAGCTGGTCACACACGGAACCGCGTTCTTCAGGTCattcaGTTTGTAATAGGCGAACTGTAGGTAGTGGTACATGGTTGCTACAAACTTCTCTACGATGAATCCTCCAACCACAGGAGTCAGCTCGGCCTCACACCTCACCTTCCTCTCCAACACCTCTGTgtagtggtctgggagggagaggggggaatgggagagagatagaagaggtggagggggggggggggttatcatCACGAGTGACCTGTTCAAGATGATCAAGAGAAATCATAAATCCATTTGTCTAAATCAACCTTTGGACAGGTAAATATATCTGTGTTGGACAGGTAAATATATCTGTGTTGGACAGGTAAATATATCTGTGTTGGACAGGTAAATATATCTGTGTTGGACTGGTAAATGACATGGTGGACATCCTCGCCTTAGATGGAGAAGATGAAAGAAAGATAGACAGACCAGCAATGGAGGGGTAGAAGTCTTTGAAGTCTTTGACCTCCCTGGCTCCTTCTGAAGCAGCCAGACATTCGTCGTAGACCTTGAAGAAATCCCTTAGAGCCAGCTCCATGTCTGACACTGAGGTACGGTAGTTATCACCGTTATACGCACGCACTGCTCGCA

Function

NR:

description
cartilage-associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786465 True 1305 lncRNA 0.44 4 52900686 52904060

Neighbor

gene id symbol gene type direction distance location
susd5 LOC106588743 coding upstream 8227 52862680 ~ 52892459 (+)
cyhr1 LOC106588755 coding upstream 255867 52641237 ~ 52644819 (+)
dclk3 LOC106588742 coding upstream 294031 52600385 ~ 52606655 (+)
zcchc17 zcchc17 coding upstream 330406 52563530 ~ 52570280 (+)
LOC110496490 NA coding upstream 555018 52340281 ~ 52345668 (+)
fkbp9 LOC106588749 coding downstream 2339 52906399 ~ 52918381 (+)
si:ch211-199g17.2 LOC106588746 coding downstream 121356 52996763 ~ 53051271 (+)
LOC110496510 LOC106588740 coding downstream 172969 53077029 ~ 53109904 (+)
LOC118941187 NA coding downstream 218052 53122112 ~ 53128537 (+)
LOC110496945 LOC106588722 coding downstream 235091 53139151 ~ 53141355 (+)
G1561429 NA non-coding upstream 4275 52864880 ~ 52896411 (+)
G1561422 NA non-coding upstream 58298 52827139 ~ 52842388 (+)
G1561421 NA non-coding upstream 74055 52826215 ~ 52826631 (+)
G1561420 NA non-coding upstream 74639 52825770 ~ 52826047 (+)
G1561125 NA non-coding upstream 80322 52819814 ~ 52820364 (+)
G1561511 NA non-coding downstream 115682 53019742 ~ 53020529 (+)
G1561433 NA non-coding downstream 134891 53038951 ~ 53041839 (+)
G1561562 NA non-coding downstream 231683 53135743 ~ 53136526 (+)
G1561593 LOC106588741 non-coding downstream 388371 53292431 ~ 53299970 (+)
G1560957 NA other upstream 458745 52441146 ~ 52441941 (+)
G1560911 NA other upstream 544851 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 643156 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 826657 52036488 ~ 52083470 (+)
G1559041 thsd7a other upstream 2265120 50633743 ~ 50635566 (+)
snrpd1 snrpd1 other downstream 271662 53175661 ~ 53178938 (+)
G1561544 LOC106588750 other downstream 373730 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 814309 53713836 ~ 53730416 (+)
G1561845 NA other downstream 913104 53817164 ~ 53840871 (+)
G1561856 NA other downstream 968113 53872173 ~ 53876930 (+)

Expression


Co-expression Network