G1561433


Basic Information

Item Value
gene id G1561433
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53038951 ~ 53041839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786411
cccacctgtctatttcctcccaagtaGTGTAGTCCCGATAttgttgctcctgctgccgctgttgCTTCTCCTCATACCAACGCCTCTCAGCtctcgccgcctccagttcttctttggggcggcgatattctccaggctgatcCCAGGGTCCTTCTCCGAACAAttcatcctcccatgtccattcctctcttTGTTGCTTCTGCTgtcgctgcctgtcaccacgctgcttggtcctggtgtggtgggtgattctgtaacggcgttcGTCTGTTGAAAgaggagcggaccaaaatgcagcgtggtggttactcatgttctttaatgatgAAGAACAAACgaacaaatacaaaacaacaaacgtaacgcgaaaacctatacagcctatcttgtaacaactaacacagagacaggaacaatcacccacaaacacacagtgaaacccaggctacctaaatatggttcccaatcagagacaacgagaatcacctgactctgattgagaaccgcctcaggcagccatagactatgctagacaCCCCACAAAACCCTAAGACAAAAACGCACCacaaaaacccatgtcacaccctggcctgaccaaataaatgaagacaAACATAACATACTACGACCAAGGCGTGACACATTGGTTAATCAGTTATAGGCACCATTAGACATGCACCTGTATTAGGAAGGTTTGTGTGTATTAATTAAGTACTATTAGACATGCACCTGTATTAGGAACATGTGTATTCTTTTTTGTATTGATACTATGGTGACGCCACCAATATAATCTAAGATGGGCGTAAATAAATCAGAAGTGAGACTGAAAGATAATGGTGGCGAAAGGCTATTAATCATTTACATAAAGAGGAGTGACTATGTATGTTATGTAAGGATGAAACTGTATAAAATTAGTGTGCTAAGACTGGGAAGATCAGTCAGTCCATGGGCCAGCTCGGCTTGttactttgtaataaagtctatttGAATTTACAAGTTCCGGTATCTGAAAAATATTATTGGATGAATATTTCCACGACAGTAGTTATTCAAAAATTCTGTTAAACACATTCCACAAAGAGGGAATCCATACAacgtatgtgacttgttaagcaactcatatcatatttaggcttgccatgacaaagaggttgaatagttattgactcaagacatgtcACCTTTTCATTTATAATTAGTAAAAATTtagaaaaacacaattccaccttgacattatggggtattgtgtagaggccagtggcaaaaaaaatctacattcaatacattttaaattcaatctaacacaacaaaatgtggataaagtaaaggggtgtgaatactttctgaaggcactgtacatatctacctgaaACACATTACTCATTGTGTTTCTCTTAttatgtgttttacttttcttttagttattttctttctctctgttttgttgtttatgaagcatgtgaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786411 True 1465 lncRNA 0.40 2 53038951 53041839

Neighbor

gene id symbol gene type direction distance location
fkbp9 LOC106588749 coding upstream 120570 52906399 ~ 52918381 (+)
susd5 LOC106588743 coding upstream 146492 52862680 ~ 52892459 (+)
cyhr1 LOC106588755 coding upstream 394132 52641237 ~ 52644819 (+)
dclk3 LOC106588742 coding upstream 432296 52600385 ~ 52606655 (+)
zcchc17 zcchc17 coding upstream 468671 52563530 ~ 52570280 (+)
LOC110496510 LOC106588740 coding downstream 35190 53077029 ~ 53109904 (+)
LOC118941187 NA coding downstream 80273 53122112 ~ 53128537 (+)
LOC110496945 LOC106588722 coding downstream 97312 53139151 ~ 53141355 (+)
LOC110496511 LOC106588739 coding downstream 99684 53141523 ~ 53173990 (+)
snrpd1 snrpd1 coding downstream 133822 53175661 ~ 53178938 (+)
G1561511 NA non-coding upstream 18422 53019742 ~ 53020529 (+)
G1561478 LOC106588754 non-coding upstream 134891 52900686 ~ 52904060 (+)
G1561429 NA non-coding upstream 142540 52864880 ~ 52896411 (+)
G1561422 NA non-coding upstream 196563 52827139 ~ 52842388 (+)
G1561421 NA non-coding upstream 212320 52826215 ~ 52826631 (+)
G1561562 NA non-coding downstream 93904 53135743 ~ 53136526 (+)
G1561593 LOC106588741 non-coding downstream 250592 53292431 ~ 53299970 (+)
G1561723 NA non-coding downstream 453558 53495397 ~ 53495714 (+)
G1561712 NA non-coding downstream 479625 53521464 ~ 53524347 (+)
G1561739 NA non-coding downstream 497935 53539774 ~ 53541773 (+)
G1560957 NA other upstream 597010 52441146 ~ 52441941 (+)
G1560911 NA other upstream 683116 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 781421 52256636 ~ 52257530 (+)
LOC110496482 LOC106588780 other upstream 964922 52036488 ~ 52083470 (+)
G1559041 thsd7a other upstream 2403385 50633743 ~ 50635566 (+)
G1561544 LOC106588750 other downstream 235951 53277790 ~ 53288465 (+)
LOC110514975 LOC106588804 other downstream 676530 53713836 ~ 53730416 (+)
G1561845 NA other downstream 775325 53817164 ~ 53840871 (+)
G1561856 NA other downstream 830334 53872173 ~ 53876930 (+)

Expression


Co-expression Network