G1562567


Basic Information

Item Value
gene id G1562567
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53112224 ~ 53115661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787804
acaggaacaatcacccaccaaacactcaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgtctctgattgagaaccacttcaggcaaccatagacttttctagataaccccactataccacaatcccaatacctaccaaaaccccaagacaaaacacaccacataattaacccatgtcacaccctggcctgaccaaaataataaagaaaacacaaaatactaagaccagggcgtgacaccttcCTAGATGTGTTTATCTAGGGAAGAGACCCGTTTGAGTTTTAAATAGTTGAAGGACAAGTAGTGCCCGGTGGCCTTGATAACAACCACAGCAGGGATATATTGACAAGGTTAACACCGGAATACGgtggccaacacacacacactaactgttGGGCTAAATGAGTACAAGACAAGGAAGCCTGATATCCTTATATAAAAGGGATAGGTAGGGGAGACCTggtgacagactgacagtacACACAACTCACACAGTTTAGTTTACAGGAGCAGCGCAGCAGTCAACATGCGCGACACAGCTAAACTAACTGCGAGAAGGATATTAGAGACAGTGCATGGTCTGACTTACGGTTTTATATGTCCTCCCACGCTGTCACGTCACCTGCGTGATTTAGTTGTTATTATTACTCGACCTGCGCTGAGTGCGAGGGATATAATCCATACTTTAAACTGTACTGACAGTCTGAAAGGTATgaagtagaacacacacactactactaccagtagATGGCAGTACTTTTCATATTTAATGCTAGCTGGATGTTGCTCTGAAATGttttgtgtgtatacagtatcatTGTTTGGCTGTGTTGAGTTTGTTAGCCTTTATACTCTGGGGCCCAGGACAGCTTGGCTGCTGTGGCTGGTGTGTTTTACACCCTAATACACTATATCATACCATTCAGTCAGTGAATCTAAGTCAGCACTCCCAAAGACACAGTAcgctcacacagacacatacacacacaccagtcagtGTCAGCTTTAGTCACATAAGACTTTATTACAATATGTTTTTTTGTTAAACATGACATCATAAAATACAATAGAGTTGTAAAAGAAAACATTTCCCTACTGTGCAAAATCCCTTTAATTCTGATATTCTGATTGTCTTACTACAGTCATTAATCATGTTAATAAAAAATGACACGACGTTATTTAACAGCCTGGTGATAGGCTATCATTTGTCACTTGTTACAGTATCAACAACAAACCCTTTTTATCTATACCAATATTTACACATTCCCTTATCGGTGTTGTAGAACTCGAGACCATCTCGCagtgtctgctttccaccagacactgcaagatgaattcacctttcagcaggacaataacctaaaaccgaaggtcaaatctacactggagttgcttaccaagaagatagtGAATGTTCCTCGAGTCCATTCTCgagaccacatattgagtgtctcgGTCTTGTCTTGTACTCACTCTTGACTCTGTctcagacagtgaggtatcaaaATGTCTTCCCGAGACCAGCAGAGTAAAAAAATGAATAATTATCAGCTCCCATTCAGAAAACCACTTAGCCAGGTCAAATATCTTAACAGCCTTTATACCTGTTATAGACATGTTGcgcagtggtgaacctatagatcttcagtatgtaacaggttagtacagtggtgaacctataggtcttcagtatgtgacaggttagtacagtggtgaacctataggtcttcagtatgtgacaggttagtacagtggtgaacctataggtcttcagtgtgtgacagtggtgaacctatagatcttcagtatgtgacaggttagtacagtggtgaacctatagatctTCAGTATGtcagtacagtggtgaacctataggccttcagtgtgtgacaagTTCGTGATTCTGAAAGGACCGTAATACCAGAGCACTAATGTAGGAGACTAcactttttgtaaaacacaaaggGCCAGTGGTCTAGTTGAGGGTATACGCAGGTATAAGCCATATACCCACTTTTGTTTTAGTGGGCATTGCTTGTACTCTTAATCCCTACTGAtgtgtatcaaagtagtgtagtggaggtgtacGACTTATCAATTATGTAGTATAATagagaaatcatgcacaaagtagcctacacaatcgCAAAGCGCGTGAAATACAGTCACATGCGTTCCACACACATAGCCTAGTTTCAGCTGAATATTATCTGCAGGCAGCAAGAGTGTGCAGCTCTCAACTAGTTTTGACATCCATAGCCGGCAGGGTAGGAGACATTTTAACTTAtgatatctaccagtaaatgATAACTAAGTTAACAATGGGTACGCAAACCAGGTATTGAAAAAGTTAAGTCCTTATTGTTGGTTAGAAGGCTATTTGTCATCATGTGCTGCATCCGGGGTGTAGACATGGATGGGCCTGGGTGGACAGAGGCCCACCCACTGTGGAGCCaggccctgacaggcccaccTAATCAGATTGATGTGGTTTTAGCATTGTTGTGGCCTTAGACCGTCACAATTTGGtattttttctttaaaaaaaaagtgtgattttgagagtgaaCATCTGAAAATGTATTTTCACACAGGGaagacagcagtcccacacagcatgatgttaaaggataagcagtccataAACTCAGACATAATAAGCCAGTTGGTCCCAAtcataagaatacaaaaacacaaccataAGGCATTTCCcaatcaaaatgtacaagtattacttcccattgcaaaaaACATTTCACGTTTAGCAAACAAAGTAACCGGTGACCTAAAGTTAAAAGTGAAAAGGACAGCGTTTTaactagggatgcacaatatatcggtgaacatatcggaatcggacgatattagcaaAAAATGGCAACATCGGTGTCGCCCGATATCTAGTTTAATGGTGATGTTAAAAACCAGTGTCAAAGCTACCGTGCATACTTATATAAC

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787804 True 2980 lncRNA 0.41 5 53112224 53115661

Neighbor

gene id symbol gene type direction distance location
LOC110496850 LOC106588723 coding downstream 96926 52918684 ~ 53015298 (-)
LOC110496507 LOC106588754 coding downstream 206410 52900671 ~ 52905814 (-)
fbxl2 LOC106588753 coding downstream 253483 52838264 ~ 52858741 (-)
clasp2 clasp2 coding downstream 287252 52731509 ~ 52824972 (-)
ubp1 LOC106588748 coding downstream 383308 52712553 ~ 52728916 (-)
LOC110496514 LOC106588757 coding upstream 67682 53183343 ~ 53187737 (-)
mturn LOC106588759 coding upstream 72414 53188075 ~ 53195009 (-)
LOC110496518 LOC106588741 coding upstream 176752 53292413 ~ 53350447 (-)
snx13 LOC106588736 coding upstream 242068 53357729 ~ 53385541 (-)
LOC110496947 LOC106588730 coding upstream 277025 53392686 ~ 53395229 (-)
G1562566 NA non-coding downstream 2455 53107984 ~ 53109769 (-)
G1562554 NA non-coding downstream 13511 53097964 ~ 53098713 (-)
G1562450 LOC106588746 non-coding downstream 27288 52996656 ~ 53084936 (-)
G1562458 NA non-coding downstream 72602 53036388 ~ 53039622 (-)
G1562451 NA non-coding downstream 193850 52906692 ~ 52918374 (-)
G1562568 NA non-coding upstream 881 53116542 ~ 53116769 (-)
G1562576 NA non-coding upstream 25977 53141638 ~ 53146920 (-)
G1562522 snrpd1 non-coding upstream 60047 53175708 ~ 53178935 (-)
G1562519 NA non-coding upstream 163840 53279501 ~ 53288523 (-)
G1562623 NA non-coding upstream 216113 53331774 ~ 53339630 (-)
G1561279 NA other downstream 464447 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 754914 52352725 ~ 52396978 (-)
G1561167 NA other downstream 861735 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 929017 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1656939 51381731 ~ 51455285 (-)
G1562762 NA other upstream 482989 53598650 ~ 53602694 (-)
tomm7 NA other upstream 506239 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 636745 53752406 ~ 53752683 (-)
G1562828 NA other upstream 758749 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 774048 53887137 ~ 53895002 (-)

Expression


Co-expression Network