G1562576


Basic Information

Item Value
gene id G1562576
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53141638 ~ 53146920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787816
AGCAGACGTGTCATGGCGTGCCTGCAGGTGTAGTGGAGGGGTGTGTTGTGTTGGTAGGTCTCTCCGTAGGACGCGTTGGGGTCCAGCCCCTCTCTGAACTGGCTGTTGCCCTCGTACAGTTGCCATGCCAACGCCTCGTCCCCGCTGACTAGAGCCTTCCGGAACTTAGTGGCTGTGTTCCCCATCACTGCCCTACAGGGGGCGTCGCACTCCGCTATTCAGTcctcacctcctcttcctctcctacacctcctcttcctctcctccactactcacAGCTCAGACATGGCCCACACCCtcaccCgttatttcataattttccttctcgACTCCCC
>TU1787817
gtcactattattctacaagaaaatagtaaaaataaagaaaaaccctggaatgagttgtACTGTATATGGAATAATACAATACATTCATGTAATAATTCATCACTAATTTGAATCTTTGATAATAATAAACACTTACCTCCGCTATTCAGTcctcacctcctcttcctctcctacacctcctcttcctctcctccactactcacAGCTCAGACATGGCCCACACCCtcaccCgttatttcataattttccttctcgACTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787816 False 335 lncRNA 0.58 3 53141638 53146920
TU1787817 True 262 lncRNA 0.38 2 53141638 53143187

Neighbor

gene id symbol gene type direction distance location
LOC110496850 LOC106588723 coding downstream 126340 52918684 ~ 53015298 (-)
LOC110496507 LOC106588754 coding downstream 235824 52900671 ~ 52905814 (-)
fbxl2 LOC106588753 coding downstream 282897 52838264 ~ 52858741 (-)
clasp2 clasp2 coding downstream 316666 52731509 ~ 52824972 (-)
ubp1 LOC106588748 coding downstream 412722 52712553 ~ 52728916 (-)
LOC110496514 LOC106588757 coding upstream 36423 53183343 ~ 53187737 (-)
mturn LOC106588759 coding upstream 41155 53188075 ~ 53195009 (-)
LOC110496518 LOC106588741 coding upstream 145493 53292413 ~ 53350447 (-)
snx13 LOC106588736 coding upstream 210809 53357729 ~ 53385541 (-)
LOC110496947 LOC106588730 coding upstream 245766 53392686 ~ 53395229 (-)
G1562568 NA non-coding downstream 24869 53116542 ~ 53116769 (-)
G1562567 NA non-coding downstream 25977 53112224 ~ 53115661 (-)
G1562566 NA non-coding downstream 31869 53107984 ~ 53109769 (-)
G1562554 NA non-coding downstream 42925 53097964 ~ 53098713 (-)
G1562450 LOC106588746 non-coding downstream 56702 52996656 ~ 53084936 (-)
G1562522 snrpd1 non-coding upstream 28788 53175708 ~ 53178935 (-)
G1562519 NA non-coding upstream 132581 53279501 ~ 53288523 (-)
G1562623 NA non-coding upstream 184854 53331774 ~ 53339630 (-)
G1562624 NA non-coding upstream 206821 53353741 ~ 53394476 (-)
G1562701 NA non-coding upstream 343280 53490200 ~ 53491431 (-)
G1561279 NA other downstream 493861 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 784328 52352725 ~ 52396978 (-)
G1561167 NA other downstream 891149 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 958431 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1686353 51381731 ~ 51455285 (-)
G1562762 NA other upstream 451730 53598650 ~ 53602694 (-)
tomm7 NA other upstream 474980 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 605486 53752406 ~ 53752683 (-)
G1562828 NA other upstream 727490 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 742789 53887137 ~ 53895002 (-)

Expression


Co-expression Network