G1562522 (snrpd1)


Basic Information

Item Value
gene id G1562522
gene name snrpd1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53175708 ~ 53178935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787758
TCATGTGGAACATCTTtaatatacaaaataagaaacaagTCGGGCTCGGGATTCACAAAAGTTTCCTCAGaaaaatgacaaaacaaaaacgttGTTGTACAAACAATAGGATATGACTGACAGCCGCGTAGTCATGGCGATCATCTCCTGGGCCCTCCCCTGCCTCGGCCTCTCCCCCTGCCACGCCCTCTTCCTCTGCCCCTTCCACGCCCAGCCaCAGCCTCTCTCTTCTTGCTCTTGACCTTGGGTTCTATGTCAACCAGCAGAGTGTCCAGCGGCAGGCTGTCTGGCAGGATGAAGTATCTGATGTTGTTCCCACGGATACTGAGGCTCTCCAGCTGGGTGGGCTCACGGTTCTTCAGAGTCATCTTTACCGCCTTTAGATGAGTGTTCATACTCACATCCACACCTGTGATTGTTCCATGGACCTGGGTGCCATTCTTCAGCTCAATGGTCACAGTCTCGTGGCTGAGTTTCATCAAAAAGCGTACGAGTTTCATGTTGGTGATGATTTGCAGAGACAAAATCTCCACCAAAGACAAAAAAATTACAGCGTAGAACTGAACGCACAGGCAGCTGTGTATAAAATACGTTTCGTCGCAG

Function

symbol description
snrpd1 Predicted to enable RNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of SMN-Sm protein complex; nucleus; and pICln-Sm protein complex. Human ortholog(s) of this gene implicated in connective tissue disease; nephritis; proteinuria; and systemic lupus erythematosus. Orthologous to human SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide).

NR:

description
PREDICTED: small nuclear ribonucleoprotein Sm D1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787758 True 603 lncRNA 0.49 4 53175708 53178935

Neighbor

gene id symbol gene type direction distance location
LOC110496850 LOC106588723 coding downstream 160410 52918684 ~ 53015298 (-)
LOC110496507 LOC106588754 coding downstream 269894 52900671 ~ 52905814 (-)
fbxl2 LOC106588753 coding downstream 316967 52838264 ~ 52858741 (-)
clasp2 clasp2 coding downstream 350736 52731509 ~ 52824972 (-)
ubp1 LOC106588748 coding downstream 446792 52712553 ~ 52728916 (-)
LOC110496514 LOC106588757 coding upstream 4408 53183343 ~ 53187737 (-)
mturn LOC106588759 coding upstream 9140 53188075 ~ 53195009 (-)
LOC110496518 LOC106588741 coding upstream 113478 53292413 ~ 53350447 (-)
snx13 LOC106588736 coding upstream 178794 53357729 ~ 53385541 (-)
LOC110496947 LOC106588730 coding upstream 213751 53392686 ~ 53395229 (-)
G1562576 NA non-coding downstream 28788 53141638 ~ 53146920 (-)
G1562568 NA non-coding downstream 58939 53116542 ~ 53116769 (-)
G1562567 NA non-coding downstream 60047 53112224 ~ 53115661 (-)
G1562566 NA non-coding downstream 65939 53107984 ~ 53109769 (-)
G1562554 NA non-coding downstream 76995 53097964 ~ 53098713 (-)
G1562519 NA non-coding upstream 100566 53279501 ~ 53288523 (-)
G1562623 NA non-coding upstream 152839 53331774 ~ 53339630 (-)
G1562624 NA non-coding upstream 174806 53353741 ~ 53394476 (-)
G1562701 NA non-coding upstream 311265 53490200 ~ 53491431 (-)
G1562682 NA non-coding upstream 331232 53510167 ~ 53511895 (-)
G1561279 NA other downstream 527931 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 818398 52352725 ~ 52396978 (-)
G1561167 NA other downstream 925219 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 992501 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1720423 51381731 ~ 51455285 (-)
G1562762 NA other upstream 419715 53598650 ~ 53602694 (-)
tomm7 NA other upstream 442965 53621900 ~ 53628443 (-)
G1562816 LOC100136012 other upstream 573471 53752406 ~ 53752683 (-)
G1562828 NA other upstream 695475 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 710774 53887137 ~ 53895002 (-)

Expression


Co-expression Network